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If you set up the analysis you want in the GUI, it will output the correct command line to the screen. 

Hope this helps

T
On 18 Apr 2008, at 11:12, Keihaninejad, Shiva wrote:
Hi,
I’ve just started working with probtrackx. If I want to consider just one mask for seed and one mask for target. How the command line should be? How can I save the output and what it should be?
 
Many thanks,
 
Shiva