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If you set up the analysis you want in the GUI, it will output the correct command line to the screen. Hope this helps T On 18 Apr 2008, at 11:12, Keihaninejad, Shiva wrote: > Hi, > I’ve just started working with probtrackx. If I want to consider > just one mask for seed and one mask for target. How the command > line should be? How can I save the output and what it should be? > > Many thanks, > > Shiva > > > >