Hey Raja,
this might not be directly helpful, but...
I remember the same problem. I had to quit the terminal after shutting
down O (11.0.5, Build 070605, on OSX 5.2). When I tried to recreate
this problem just now, everything worked fine. Bash returns with the
prompt after I quit O.
Is your computer up to date?
Andreas
Raja Dey wrote:
> Hi All,
> Every time I quit from 'O' (version 11.0.5) my bash terminal
> freezes. Otherwise 'O' is working fine. Does anyone have the same
> experience? Is there any solution to this? I am using 13" macbook
> leopard (OSX 10.5) with intel core 2 duo. I enclosed the text I got on
> the task window after opening 'O'.
> anand2:~ rajadey$ ono
> No dials
> Mono enabled only
> Gamepad disabled
> ODAT environment variable :/usr/local/ono/data/
> O > O for Mac & Intel processors.
> O > Use of this program, implies acceptance of the present
> O > set of conditions of use.
> O > Contact [log in to unmask] if in doubt.
> O > O version 11.0.5, Build 070605
> O > Define an O file (terminate with blank):
> O > Menu names are not defined.
> O > Enter file name [/usr/local/ono/data/menu.odb]:
> O > menu.odb file for O version 11.0.5, 070605
> O > Database compressed.
> O > Database compressed.
> O > Database compressed.
> O > Database compressed.
> O > Database compressed.
> O > Database compressed.
> O > Forsyth & Wells Scattering Factors Acta Cryst 12 (1959) 412-5
> O > Startup file was never loaded
> O > Enter file name [/usr/local/ono/data/startup.odb]:
> O > startup.odb file for O v0 050807
> O > Stereochemistry file was never loaded
> O > Enter file name [/usr/local/ono/data/stereo_chem.odb]:
> O > stereochemistry amino acids and nucleic acids, Date: 030213
> O > RNA conformers, 030213
> O > HIS C O connection
> O > TYR ATOM/fragment_all corrected
> O > 021128 Fragment_ALL, modify ATOM records to use \, main-chain RNA fix
> O > 021127 Connectivty CONNECT_ALL
> O > 021112 PRO changed to be flexible ring pucker, different
> side-chain angles
> O > 021113 AGCU added 2 'dummy' torsion_flexibles to allow build_res
> C option
> O > 021113 AGCU sugar pucker flexible on advice of Phil Evans, email
> 010613
> O >
> O > JCS (20030215)
> O > Modified DNA to include connect_all, centre, atom, and modified
> whole
> O > file to use ' instead of * (for CNS output)
> O > JCS (20061008)
> O > Finally made stereo_chem_gly the default. Has a lot of sugar
> information
> O > JCS (20071008)
> O > This is the CNS/DNA freindly version of stereo_chem.odb and is
> default
> O > for James's custom O database. Here's what it has:
> O > 1. DNA is default.
> O > 2. Primes (') instead of stars (*) for the sugars in nucleic
> acid.
> O > 3. C5A instead of C7 for the exocyclic methyl in thymidine.
> O > 4. James's special torsion definitions for building nucleic
> acids:
> O > chi, chi', alpha, alpha', beta, beta', gamma, gamma',
> O > delta, and delta'
> O > 5. The Ile delta carbon takes the CNS name (CD) instead of the
> O > standard (CD1)
> O >
> O > read ok
> O > No codes checked
> O > Connectivity used is : all
> O > There were 63 residues.
> O > 646 atoms.
> O > ODAT in use : /usr/local/ono/data/
> O > Number of mouse buttons 3
> O > Default fog values have been defined
> O > These are in ODB .ogl_light entries 14-16
> O > Making visibility data structures.
> O > Making visibility data structures.
> As4> ......No message from the O administrator........
> Heap> dial_speed_sgi.odb - gerard kleywegt @ 940120/940825
> Heap>
> Heap> toggle between fast dials (e.g., for tor_res) and
> Heap> slow dials (e.g., while rotating) on SGIs
> Heap>
> Heap> type:
> Heap> menu @fast_dials on on
> Heap> menu @slow_dials on on
> Heap> menu @faster on on
> Heap> menu @slower on on
> Heap>
> Heap> Database compressed.
> Heap>
> Heap> Datablock file read successfully !
> Heap>
> New> Number of mouse buttons 3
>
> Thanks...
> RD
>
>
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