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There's some stuff in the archives about this type of thing...or at least something similar (I came across it a while ago).

FSL is sensitive to radiographic/neurological orientation.

I don't know but maybe this thread will solve your problem?

http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0711&L=FSL&P=R17024&I=-3

Suzanna


On 20 Mar 2008, at 10:08, H.D. Xiang wrote:

Hi all,

I wonder if anyone has noticed the same problem as I just did. Looks like a bug, and if it is , a big bug in fslview.

I used fslview to draw a mask (let's name it 'left_mask') on the left hemisphere (based on a nii template) and saved it. Then just to make sure, I added this saved 'left_mask' back to fslview. I found it went to the right hemisphere automatically.

I opened this 'left_mask' in Mricron, it was still on the right hemisphere.

I tried several times for this and the problem is always there. Is it a bug or did I do something wrong?


Thanks!

x

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Huadong X               PhD student
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