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I want to draw a picture of the contact of a 22-mer peptide with a protein 
in a 2-D perspective. Would be basically be what Ligplot does, however I 
don`t like the output of this program. I know that using programs like 
ChemDraw I can do it manually but decide to see if anyone knew about a 
program that could at least project a 3-D pdb file of a peptide into a 2-D 
image. As already posted MIFit is an option but it seems that only does it 
for individual residues.
Sandra

At 01:15 PM 3/28/2008, you wrote:
>just out of curiosity, why ?
>
>         A.
>
>On 28 Mar 2008, at 17:15, Sandra Dias wrote:
>
>>Does anyone know of a program, different from Ligplot, that can
>>draw 2D image of peptides out a pdb file? It would be a plus if it
>>can establish and draw contacts between this peptide and the
>>neighbors residues.
>>thanks in advance for any input.
>>Sandra