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That worked great. Thanks! Matt Glasser wrote: >Load the brain into FSLView and move the crosshair to the location you think >is the center of the brain and then record the voxel coordinates of the >crosshair. > >Peace, > >Matt. > >-----Original Message----- >From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf >Of Vina Goghari >Sent: Thursday, February 21, 2008 10:49 AM >To: [log in to unmask] >Subject: Re: [FSL] BET > >Hi Matt, >What is the best way to find the actual center? >Thanks, >Vina > >Matt Glasser wrote: > > > >>You should ensure that the center coordinate (given by the -c <x> <y> <z> >>argument) is correctly located. You can load the image in FSLView and find >>the voxel coordinates that reflect the actual center of the brain. The >>default center will be the voxel coordinates that are loaded by default in >>FSLView. >> >>Peace, >> >>Matt. >> >>-----Original Message----- >>From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf >>Of Vina Goghari >>Sent: Tuesday, February 19, 2008 7:54 PM >>To: [log in to unmask] >>Subject: [FSL] BET >> >>Hi, >>I have some extra brainstem that I would like to remove using FSL and am >>not have much luck changing the -f and -g values from the default to do >>it. Any suggestions for that? >> >>Thanks, >>Vina Goghari >> >> >> >>