 |
 |
Hi SPMers,
I just downloaded and installed the latest SPM5 and VBM5 in
this afternoon. I can use them normally with GUI. However, I want to do some
batch things to save my time. I tried it and met some problems.
I tried to run the example listed on the website only for
testing. But it did not work.
I run “cg_vbm_batch.sh
/usr/local/spm5/canonical/single_subj_T1.nii –s /usr/local/spm5”
I got such log file:
----------------------------------
Fri Jan 11 19:29:42 EST 2008
----------------------------------
/usr/local/spm5/toolbox/vbm5/cg_vbm_batch.sh
/usr/local/spm5/canonical/single_subj_T1.nii
< M A T L A B >
Copyright 1984-2007 The MathWorks, Inc.
Version 7.5.0.338 (R2007b)
August 9, 2007
To get started, type one of these: helpwin, helpdesk,
or demo.
For product information, visit www.mathworks.com.
--------------------------
Running "VBM: Estimate + Write"
Options:
Gaussians: 2
2 2 4
Warp cutoff: 25
Warp
regularisation: 1
Bias
regularisation: 0.0001
Bias FWHM: 70
Clean up: 1
MRF weighting: 0.3
Write affine only: 0
Use tissue priors: 1
??? Error using ==> spm_slice_vol
Bad image handle dimensions.
Error in ==> spm_load_priors at 27
tmp =
spm_slice_vol(B(k1),M,B(1).dim(1:2),0)*(1-lm*2)+lm;
Error in ==> cg_vbm at 68
b0 =
spm_load_priors(B);
Error in ==> cg_config_vbm>execute_estwrite at 718
res = cg_vbm(job.data{i},job.opts);
Error in ==> spm_jobman>run_struct1 at 1585
feval(prog,val);
Error in ==> spm_jobman>run_struct1 at 1595
run_struct1(c.val{i},gui);
Error in ==> spm_jobman>run_struct1 at 1595
run_struct1(c.val{i},gui);
Error in ==> spm_jobman>run_struct1 at 1595
run_struct1(c.val{i},gui);
Error in ==> spm_jobman>run_job at 480
run_struct1(c,gui);
Error in ==> spm_jobman at 95
run_job(varargin{2},0);
Error in ==> cg_vbm_batch at 26
spm_jobman('run_nogui',jobs)
>>
I don’t know where is wrong. Who can help me?
Cheers
Xiaochu Zhang Ph.D
Visiting Research Fellow
NIH/NIDA-IRP
Tel: (410) - 550 - 1440 ext. 434