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Dear Sarah, Feat should automatically produce all the time-series plots for you. There is no need to run tsplot manually. It sounds like your FSL installation or VM is broken in some way. I am not sure exactly what is wrong. Did you follow the installation instructions for the FSL VM exactly? I note from your previous email that your .feat folders are created as root. Are you logging in as root or as the fsl user? Any other information you can give us about how you installed your VM and fsl or about the errors would be helpful. All the best, Mark On 14 Jan 2008, at 21:59, Sarah Andersen wrote: > Dear FSLers, > As someone new to FSL, I have been working through the tutorial and > manuals to help my understanding of FEAT. However, I have run > across the same issue each time I run FEAT. This happens for both > the tutorial av data (from the fsl_course_data tarball) and my own > fMRI data, so I believe it isn’t a problem with data corruption. > When I check my output against the diagram of the expected FEAT > output in the online manual (http://www.fmrib.ox.ac.uk/fsl/feat5/ > output.html), I don’t have either a tsplot or a reg_standard/stats/ > folder created. Does this mean that there was an error in my > analysis somewhere? Or do you need to create these on your own by > using the tsplot command and the renderhighres commands? > Additionally, the html FEAT report post-stats section is lacking > any time series plots of the data vs. the model. While the zstat > and thresholded zstat images are still created and usable, I am > concerned that they may not be reliable given this error. > > This may not be relevant to my issue, but I am running FSL v4.0 in > a virtual environment with the VMware player recommended on the > website. > > Thanks in advance, > Sarah > > Sarah Andersen > Research Specialist > Dept. of Neurology > Dept. of Speech, Language, and Hearing Sciences > (520) 621-9878 > [log in to unmask] >