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Hi, I am using fslstats to calculate summary statistics for DTI data. I have run TBSS, converted the significant voxels back into native space, and now would like to calculate statistics like mean FA for the masked region. However, the intensities that fslstats calculates when I run the following command line are not the same as when I click on the voxels in the fslview GUI!? fslstats <my input in native space> -k <my mask in native space> -R Am I doing something wrong with fslstats? Many thanks, James