Christoph Gille's program STRAP generates structure-based multiple sequence alignment, which can be combined with sequences for which no structure is available. http://www.charite.de/bioinf/strap/ Klaus --------------------------------------------------------------------- Klaus F¨¹tterer, Ph.D. School of Biosciences P: +44-(0)-121-414 5895 University of Birmingham F: +44-(0)-121-414 5925 Edgbaston E: [log in to unmask] Birmingham, B15 2TT, UK W: www.biochemistry.bham.ac.uk/klaus/ --------------------------------------------------------------------- On 5 Dec 2007, at 05:03, david wu wrote: > Hi all£¬ > > I want to produce structure-based multiple sequence alignment of my > protein with five of its homologs on DALI server. However, when I > tried the "Database Search Form", only one homolog was picked up > from PDB. If I align my protein with each homolog by the "DaliLite > Pairwise comparison", how can I combine them together? > > Thanks in advance. > > > Best regards, > > Sincerely, > > Dalei Wu > Drug Discovery and Design Center > Shanghai Institute of Materia Medica > Shanghai Institutes for Biological Sciences > Chinese Academy of Sciences > 555 Zu Chongzhi Road, Shanghai, 201203, China > [log in to unmask] > 2007-12-05