Hi Leonhard
I personally prefer to run matlab in the terminal window (but having
started X11 in advance). If you write matlab -nodesktop in the
terminal window you have access to the editor if you write edit, and
you be able to cut and paste into the command line, and open the
finder from the maltab prompt e.g. by writing !open .
Best
Torben
On 26/11/2007, at 14.47, Leonhard Schilbach wrote:
> Hi Torben,
>
> Thanks for your help! SPM5 seems to be running fine on my Macbook
> under Matlab 7.3, but only if I start matlab directly from an X11
> terminal (matlab –nojvm) without the editor window (otherwise you
> get: “Java for ppc cannot run in this configuration.”). This is
> somewhat annoying, that’s why I tried to switch to 7.4 hoping that I
> wouldn’t have the same problems.
>
> I have downloaded SPM5 again and the latest updates which I have
> copied into the SPM5 folder. When I start SPM5 on matlab 7.4 now
> things seem to run smoothly, but one problem I have noted is that I
> can’t overlay SPMs on templates or mean anatomical images which
> gives the following error:
>
> Can not use image "/Applications/MATLAB_SV74/spm5new/canonical/
> single_subj_T1.nii,1"
> Warning: Nothing to register with
> > In spm_orthviews>register at 589
> In spm_orthviews at 330
> In spm_sections at 33
> In spm at 858
> ??? Reference to non-existent field 'registry'.
>
> Error in ==> spm_orthviews>register at 591
> st.centre = spm_XYZreg('GetCoords',st.registry.hReg);
>
> Error in ==> spm_orthviews at 330
> register(varargin{1});
>
> Error in ==> spm_sections at 33
> spm_orthviews('register',hReg);
>
> Error in ==> spm at 858
> evalin('base',CBs{v-1})
>
> ??? Error using ==> spm('PopUpCB',gcbo)
> Reference to non-existent field 'registry'.
>
> ??? Error while evaluating uicontrol Callback
>
>
>
> Cheers,
>
> Leonhard
>
>
>
>
>
>
> Am 26.11.2007 14:11 Uhr schrieb "Torben Ellegaard Lund" unter <[log in to unmask]
> >:
>
>> Hi Leonhard
>>
>> I have not tried Matlab 7.4.0 on my MacBookPro yet. But I do know
>> that SPM works well on intel macs with Matlab 7.3.0 installed on
>> either Tiger or Leopard. 7.3.0 is the version the mexmaci files
>> were compiled for. As these files are not in the original SPM5
>> distribution, you need to have the latest update installed, is that
>> the case? Also if you want to compile the C-programs yourself make
>> sure you have the mac XcodeTools installed.
>>
>> Best
>> Torben
>>
>>
>>
>> On 26/11/2007, at 13.33, Leonhard Schilbach wrote:
>>
>>> Dear SPMers & experts,
>>>
>>> I am trying to run SPM5 using Matlab 7.4.0 on a Macbook. I can
>>> start the program just fine, but whatever I am trying to do I get
>>> errors indicating that files are not compiled such as:
>>>
>>> In Batch_Analysis_imp_SE at 28
>>> ??? Error using ==> spm_list_files at 15
>>> spm_list_files.c not compiled - see spm_MAKE.sh
>>>
>>> Error in ==> Batch_Analysis_imp_SE at 33
>>> [Files,Dirs] = spm_list_files(datarun{run},'s*.img');
>>>
>>> OR:
>>>
>>> ??? Error using ==> spm_sample_vol at 36
>>> spm_sample_vol.c not compiled - see Makefile
>>>
>>> Error in ==> spm_get_data at 41
>>> Y(i,:) = spm_sample_vol(V(i),XYZ(1,:),XYZ(2,:),XYZ(3,:),0);
>>>
>>> Error in ==> spm_getSPM at 525
>>> Z = min(Z,spm_get_data(xCon(i).Vspm,XYZ));
>>>
>>> Error in ==> spm_results_ui at 264
>>> [SPM,xSPM] = spm_getSPM;
>>>
>>> ??? Error using ==> [hReg,xSPM,SPM] = spm_results_ui;
>>> Error using ==> spm_sample_vol at 36
>>> spm_sample_vol.c not compiled - see Makefile
>>>
>>> ??? Error while evaluating uicontrol Callback
>>>
>>>
>>>
>>> When trying to compile using the following commands...
>>>
>>> make PLATFORM=Darwin.intel
>>> OR:
>>> make install PLATFORM=Darwin.intel
>>>
>>> ...I end up getting the following error message in X11:
>>>
>>> mex -O -c spm_mapping.c
>>> gcc-3.3: installation problem, cannot exec `cc1': No such file or
>>> directory
>>>
>>> mex: compile of 'spm_mapping.c' failed.
>>>
>>>
>>> Any advice and help with this would be greatly appreciated! Thank
>>> you very much in advance!
>>>
>>> Best,
>>>
>>> Leonhard
>>>
>>>
>>>
>>> --
>>>
>>> Leonhard Schilbach
>>>
>>> Department of Psychiatry
>>> University of Cologne
>>> Kerpener Str. 62
>>>
>>> 50924 Cologne, Germany
>>>
>>> mobile: +49 170 386 6983
>>> facsimile: + 49 221 478 3738
>>>
>>> __
>>> http://www.medizin.uni-koeln.de/kliniken/psychiatrie/Bildgebung/schilbach.htm
>>>
>>>
>>>
>>
>>
>
