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Dear Clark,

For the record, the cluster size random field test for Gaussian images was
proposed in Friston, Worsley, et al, 1994, HBM 1:210-220, and extended to t
& F fields by Cao, 1999, Adv Appl Probability 31:579-595 (for a concise
listing of RF results, see Cao & Worsley's chapter in the book "Spatial
Statistics: Methodological Aspects and Applications", Springer Lecture Notes
in Statistics, Vol 159; also, Poline, Worsley, Evans & Friston, 1997, NI
5:83-97, develops a cluster test for Gaussian images using a joint
size-height statistic.)

As for the reviewer's comment, I would have to understand that the reviewer
was specifically referring to Gaussianization when they said that the "use
corrected P-values based on the cluster-size statistic" is not state of the
art, and not cluster size inference in general.

But I think you have an easy reply that will silence the reviewer:  Both FSL
*and* SPM(5 & older) use Gaussianization for cluster size inference; only
Keith Worsley's fmristat offers an implementation of all the current
results.  SPM's voxel-wise results use the current t/Chi^2/F results, but
the cluster size results for t just use the alpha-level of the
cluster-defining threshold and then use the Gaussian results.  Karl has said
this method doesn't Gaussianize, as much as it assumes a Gaussian ACF.
Whatever the details, neither FSL nor SPM are using the "state of the art" t
or F cluster size results.  It is currently on the plan for the next version
of SPM to incorporate Keith Worsley's statthreshold code into SPM to use the
most up-to-date results.  FSL?  TBD :)

Finally, to echo Steve's response, FDR is a different beast altogether, and
just another voxel-wise inference method.

-Tom
____________________________________________
Thomas Nichols, PhD
Director, Modelling & Genetics
GlaxoSmithKline Clinical Imaging Centre

Senior Research Fellow
Oxford University FMRIB Centre