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Hi - I think all of these queries have just been answered by people on the FSL list in the last couple of days. Cheers. On 21 Nov 2007, at 16:14, Adil Javed wrote: > Hi, > I have 2 questions: > > 1-I am trying to use the tutorial on FIRST. when I > run the scripts: > > [AJ@localhost first]$ run_first -i subject2_T1 -t > subject2_T1_to_std_sub.mat -n 10 -o > subject2_L_Caud_n10 \ -v -m > /usr/local/fsl/data/first/models_317_bin/L_Caud_bin.bmv > > I get: /usr/local/fsl/bin/run_first: line 88: [: too > many arguments > > does anyone know what am I doing wrong? > > Question 2: when I run fast using default options in > the terminal, I get the output in the terminal with > CSF/GM/WM volumes. But when I run using segmentation > classes (-c 4) either in the terminal or GUI, I do not > see the output volumes in the terminal. It does say > that segmentaion was done successfully and the image > file is there. How do I get the volumes using -c 4 > option as recommended. Do I need to use fsalmaths? > > Also, which is better: getting segmentation from FAST > or SienaX? > > thanks so much in advaance for your help. > Adil Javed --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------