So, it appears that the patched version of fsl does not have the change
described below by Tim
: (
-Dianne
On 8/21/07, Tim Behrens <[log in to unmask]> wrote:
>
> Hi Matt is right (as always!), although the filenames have changed.
>
> (Matt, if you download the new version of FSL, you will be able to
> smile at our new GUI)
>
> The file that calls xfibres is now called
> $FSLDIR/bin/bedpostx_single_slice.sh
>
>
> if you look at this file, you should see the following line
>
>
> ${FSLDIR}/bin/xfibres\
> --data=$subjdir/data_slice_$slicezp\
> --mask=$subjdir/nodif_brain_mask_slice_$slicezp\
> -b $subjdir/bvals -r $subjdir/bvecs\
> --forcedir --logdir=$subjdir.bedpostX/diff_slices/data_slice_$slicezp\
> --fudge=$fudge --nj=5000 --bi=$bi --se=100 --upe=24 --nfibres=
> $nfibres > $subjdir.bedpostX/logs/log$slicezp && echo Done
>
>
> if you change --nj=5000 to 1250, and --se=100 to 25
>
> you should have something that takes a lot less time!
>
>
> Also - just to check, your Z row of bvecs should have around 30
> numbers in (rather than 3)...
>
>
> Cheers all
>
> T
>
>
--
Dianne Patterson, Ph.D.
[log in to unmask]
ERP Lab
University of Arizona
621-3256 (Office)
