Hi Steve,
"Alternatively, you could work out how to reduce the field-of-view to
just include the brain of each time point before feeding the output of
that into SIENA. You would use FSLView on each image to work out the
field-of-view and then use fslroi to reduce the FOV of the image."
I created a whole brain mask for the animal brain using FSLView.
But, it is not easy to understand how to use fslroi.
fslroi <input> <ouput> <xmin> <xsize> <ymin> ...
I just don't know how to determine these parameters and when I am supposed to use the mask file in fslroi.
Would you kindly let me know how to reduce the field-of-view to include the brain?
Thank you,
Buyean
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