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In Coot (0.3.2 and later) you could also try the following: - center on the serine to be phosphorylated - click Extensions->Phosphorylate this residue and Coot will sort out phosphorylation, renumbering etc in no time. JED -----Original Message----- From: CCP4 bulletin board [mailto:[log in to unmask]]On Behalf Of U Sam Sent: 04 September 2007 23:42 To: [log in to unmask] Subject: [ccp4bb] covalently bonded Ligand fit Hi I am trying fit a ligand (organo phosphate) covalently bonded to residue Serine 250 in my structure. How can I connect this phosphate to Ser-O and during refinement (refmac and CNS), how should I mention in the ligand in the input and how should I number it? I use COOT as graphics. Thanks for suggestion. Sam. _________________________________________________________________ Invite your mail contacts to join your friends list with Windows Live Spaces. It's easy! http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us