On 8/16/07, Steve Smith <[log in to unmask]> wrote:

Hi - I think this is an old "feature" which hasn't quite gone away
yet - I think you'll find that as soon as you start moving around in
the image the colourmap shows correctly?

Cheers.

On 16 Aug 2007, at 21:51, Dianne Patterson wrote:

> Sorry to bother you all with this, but either it is a little bug or
> I'm doing something dumb:
>
> I am having trouble calling fslview from the commandline with any
> lut but the standard greyscale.
> Here's the command I run (that is a lower case L, I presume):
>
> dpat% fslview frontal_l.nii.gz -l Red
>
> When I look at the information panel, it claims the lut is red, but
> the display is greyscale.
> If I change the lut in the gui, I get the correct red display.
> It does not seem to matter whether I ask for the base image to be
> red, or the overlay image or both.
> It doesn't help to say red or Red or "Red" or Green etc...
>
> This is an Intel Mac Pro running the latest updated Tiger and the
> new fsl 4.0
> I thought this used to work... ; P
>
> -Dianne
>
> ====================================
> [Data/dti_erp/e3131] dpat% fslview --help
>
> fslview (Version 2.4pre0)
>
> Copyright(c) 2005, University of Oxford
> Dave Flitney
>
> Usage:
> fslview [-m 3d|ortho|lightbox] <baseimage> [-l lutname] [-b low,hi]
> [ <overlay> [-l lutname] [-b low,hi] ] ...
>
> Optional arguments (You may optionally specify one or more of):
>         -V,--verbose    switch on diagnostic messages
>         -h,--help       display this message
>         -m,--mode       Initial viewer mode. One of: 3d; ortho;
> lightbox
>         -l,--lut        Lookup table name. As per GUI, one of:
> Greyscale; "Red-Yellow"; "Blue-Lightblue"; Red; Green; Blue;
> Yellow; Pink; Hot; Cool; Copper, etc.
>         -b,--bricon     Initial bricon range, e.g., 2.3,6
>
>
> [Data/dti_erp/e3131] dpat% fslview frontal_l.nii.gz -l Red
>
> --
> Dianne Patterson, Ph.D.
> [log in to unmask]
> ERP Lab
> University of Arizona
> 621-3256 (Office)

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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director,  Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK
+44 (0) 1865 222726  (fax 222717)
[log in to unmask]    http://www.fmrib.ox.ac.uk/~steve
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