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Aha...thankyou!! -Dianne On 8/16/07, Steve Smith <[log in to unmask]> wrote: > > Hi - I think this is an old "feature" which hasn't quite gone away > yet - I think you'll find that as soon as you start moving around in > the image the colourmap shows correctly? > > Cheers. > > > On 16 Aug 2007, at 21:51, Dianne Patterson wrote: > > > Sorry to bother you all with this, but either it is a little bug or > > I'm doing something dumb: > > > > I am having trouble calling fslview from the commandline with any > > lut but the standard greyscale. > > Here's the command I run (that is a lower case L, I presume): > > > > dpat% fslview frontal_l.nii.gz -l Red > > > > When I look at the information panel, it claims the lut is red, but > > the display is greyscale. > > If I change the lut in the gui, I get the correct red display. > > It does not seem to matter whether I ask for the base image to be > > red, or the overlay image or both. > > It doesn't help to say red or Red or "Red" or Green etc... > > > > This is an Intel Mac Pro running the latest updated Tiger and the > > new fsl 4.0 > > I thought this used to work... ; P > > > > -Dianne > > > > ==================================== > > [Data/dti_erp/e3131] dpat% fslview --help > > > > fslview (Version 2.4pre0) > > > > Copyright(c) 2005, University of Oxford > > Dave Flitney > > > > Usage: > > fslview [-m 3d|ortho|lightbox] <Bassimage> [-l lutname] [-b low,hi] > > [ <overlay> [-l lutname] [-b low,hi] ] ... > > > > Optional arguments (You may optionally specify one or more of): > > -V,--verbose switch on diagnostic messages > > -h,--help display this message > > -m,--mode Initial viewer mode. One of: 3d; ortho; > > lightbox > > -l,--lut Lookup table name. As per GUI, one of: > > Greyscale; "Red-Yellow"; "Blue-Lightblue"; Red; Green; Blue; > > Yellow; Pink; Hot; Cool; Copper, etc. > > -b,--bricon Initial bricon range, e.g., 2.3,6 > > > > > > [Data/dti_erp/e3131] dpat% fslview frontal_l.nii.gz -l Red > > > > -- > > Dianne Patterson, Ph.D. > > [log in to unmask] > > ERP Lab > > University of Arizona > > 621-3256 (Office) > > > ------------------------------------------------------------------------ > --- > Stephen M. Smith, Professor of Biomedical Engineering > Associate Director, Oxford University FMRIB Centre > > FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK > +44 (0) 1865 222726 (fax 222717) > [log in to unmask] http://www.fmrib.ox.ac.uk/~steve > ------------------------------------------------------------------------ > --- > > -- Dianne Patterson, Ph.D. [log in to unmask] ERP Lab University of Arizona 621-3256 (Office)