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Hi - the DOF are not controllable in mcflirt as it always uses rigid body correction (dof=6) and is tuned for that. If you need more DOF then you should use FLIRT. I think eddy_correct will do what you want (have a look inside it). Cheers. On 24 Aug 2007, at 23:46, Jack Grinband wrote: > Hi All, > I need to change the default parameters for mcflirt. I looked in > feat.tcl > and a couple of other places but couldn't find the relevant code. I'd > appreciate if someone could tell me where to look: I need to > change the > dofs from 6 to 9. thanks! > > jack ------------------------------------------------------------------------ --- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve ------------------------------------------------------------------------ ---