Dear Andy,
This is some kind of malfunction in the DataShifter. Unfortunately Wim who
wrote the code is on holiday till next week.
For some reasson I do not understand the DataShifter seems to have shifted
the ChemCompNmrRef reference data. One of these seems to be for a ChemComp
that was present in the original project but not in the target project. So
the validity checking ppicks a dangling derived link to non-existing
ChemComp. Alternatively, it may be that the error was present already
before the DataShifting, but that it only gets picked up in the validity
check afterwards.
I would propose that after the DataShifting, but before saving, you should
delete all ChemCompNmrRefs. They are reference data, you can always get
them back again. Go into the command line and type:
for nmrReferenceStore in top.project.nmrReferenceStores:
for chemCompNmrRef in nmrReferenceStore.chemCompNmrRefs:
chemCompNmrRef.delete()
Then save the project afterwards.
If we are luckly that will help.
Yours,
Rasmus
---------------------------------------------------------------------------
Dr. Rasmus H. Fogh Email: [log in to unmask]
Dept. of Biochemistry, University of Cambridge,
80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
On Tue, 17 Jul 2007, Dr Andy Herbert wrote:
> Hi,
>
> All that follows after clicking ok is:
>
> ['ApiError: ccp.nmr.NmrReference.ChemCompNmrRef.checkValid:
> chemComp:value cannot be None:\n']
>
> Cheers
>
> Andy
>
>
> On Tue, 2007-07-17 at 16:05 +0100, Rasmus Fogh wrote:
> > Dear Andy,
> >
> > The "Deprecated: getByKey called with too short key" warnings are no cause
> > for alarm. This code is part of the way we handle migration from the old
> > to the new machinery. The warnings mean that someting needs to be changed
> > before we finish the migration, but nothing is worng with your project.
> >
> > The final line 'The project is not valid ...' is another matter, but the
> > reason for it is not shown in your mail. As I read the code, the real
> > error message should be printed out once you click 'OK' on the error
> > popup. Could you try again, and check that you have clicked 'OK' on the
> > error popup before you copy the error message from the command line?
> >
> > Yours,
> >
> > Rasmus
> >
> > ---------------------------------------------------------------------------
> > Dr. Rasmus H. Fogh Email: [log in to unmask]
> > Dept. of Biochemistry, University of Cambridge,
> > 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
> >
> > On Tue, 17 Jul 2007, Dr Andy Herbert wrote:
> >
> > > Hi,
> > >
> > > When trying to copy an experiment from one project to another using
> > > DataShifter I get the following error message when I try and save the
> > > project:
> > >
> > > Checking new object validity - this might take a while.
> > > Checking done.
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/X mlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > > Deprecated: getByKey called with too short key
> > > from doLoad line 770
> > > in /Users/wb104/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> > > None
> > >
> > > Followed by an error popup saying:
> > >
> > > The project is not valid and will not be saved. Sorry - try again from
> > > scratch.
> > >
> > > cheers
> > >
> > > Andy
> > >
> > > --
> > > Dr Andy Herbert
> > > Department of Chemistry
> > > University of Edinburgh
> > > West Mains Road
> > > Edinburgh
> > > UK
> > > EH9 3JJ
> > > Tel: +44 (0)131 650 4704 or 650 7372
> > > Email: [log in to unmask]
> > >
> >
> --
> Dr Andy Herbert
> Department of Chemistry
> University of Edinburgh
> West Mains Road
> Edinburgh
> UK
> EH9 3JJ
> Tel: +44 (0)131 650 4704 or 650 7372
> Email: [log in to unmask]
>
