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Hi, everyone,

 

I am recently solving a structure at 1.8A. After I fitted all residues
into the model, I found that there was an extra density in a pocket
consisted of E, N, R and other hydrophobic residues. The density is
strong and connected like a butterfly.  I checked the crystallization
condition. I can not figure out what it is. It seems that it is not from
the crystallization components.  

 

Does anyone know how to figure out what the density is? Is there any
program or database I can use to predict the potential ligand?

Thanks.

 

Mousheng