We are pleased to announce the release of Coot-0.3.2 "Don't Bet on the River"
Source tar ball here:
Binaries here:
Paul.
Release Notes:
o Fix crash due to rigid body refinement of atoms with zero
occupancy
o Add further SHELX support: .res files are split and un-split on
reading/writing. Solve the ^M problem like SHELX does. SHELXL
refinement interface improved [GMS]
o Fix crash when applying NCS edits [Michael Url]
o Fix problems of incorrect actions on pressing NCS buttons
[Christopher Rife]
o Fix (potential?) crash on finding blobs and waters [Kevin Cowtan]
o Fix crash apparent after deleting all maps then reading a new one
while the Display Control window was open
o Instability problems due to 60+ molecules addressed [but difficult
to test thoroughly]
o Added CNS map-reading [provided by Kevin Cowtan]. ".cns" is now
an acceptable map extension
o Add Terminal Residue for nucleotide polymers
o Alt confs of ligands no longer fly apart on regularization
o Ramachandran plots now tell us the Preferred/Allowed/Outlier stats
o Add user-settable contour levels and block size for Ramachandran plots
o GTk+-2 interface now usable
o Added SEGID info to clicked atom [Christine Durnham]
o Added function fill-partial-residue [Bob Nolte]
o Added function transform-molecule-by [Alastair Fyfe]
o map transformation function fixed [Chris Meier]
o Added function to change the colour of the unit cell [Dirk Kostrewa]
o Added timer-based socket reading for Phenix and other interfaces
o Added function "blob under cursor -> screen centre" [FvD]
o Fix problem of Change Chain ID Residue Range inserting into the wrong
place [Judit Debreczeni]
o Fix map reading so that it accepts user-approved extensions
[Peter Meyer]
o Reading a bespoke cif dictionary no longer cripples "Get Monomer"
for conventional residues [Judit Debreczeni]
o Added Views system [inspired by PyMol]
o Colour by B-factor and Occupancy [Jean Whittingham]
o Ramachandran plot dialog remembers where it was put last time
[Shawn Williams]
o U matrix now correctly read for SHELXL .res files [Dale Tronrud]
o Display Control confusion about Display/Active state of molecules
untangled [Bob Nolte]
o state file saves stereo mode [Bob Nolte].
o Add ability to set the atom radius for Raster3D output
o On startup, the Go To Atom dialog no longer is inconsistent
between the chain chain and molecule chooser [GMS]
o phosphorylate-active-residue function added, with GUI menu item
o Further tinkering with the bonding algorithm
o Using side-by-side stereo with slow graphics is no longer
nauseating [Randy Read]
o generic-double-entry interface changed, breaking
backwards-compatibility. It now takes arguments for a check
button.