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Yes, this is an inconsistency between the version of the Phaser executable and the version of ccp4i. To get around the problem that filenames, particularly in Windows, can have spaces in them, the ccp4i GUI now wraps filenames with quotation marks. But this required a corresponding change in the Phaser parser. You're running the version of ccp4i that puts in quotation marks with the older version of Phaser (probably from Phenix) that doesn't know about them. To avoid this confusion in the future, Ralf Grosse-Kunstleve has changed things so that the version of Phaser in Phenix is called phenix.phaser. From the next release of Phenix on, there won't be a confusion between installations. In the meantime, our FAQ page has instructions on how to configure ccp4i so that it finds the executable that you want. Randy Read On Jun 10 2007, Ed Wright wrote: >Dear All, >I can't seem to read my mtz files with 'PHASER for MR' in version >ccp4i 6.0.2 running on either a linux or irix system. I can read the mtz >files with virtually every other CCP4 subroutine. Any ideas/suggestions? > >The error I get in the log file is " > > > **************************************************************************** > ********* > >*** Phaser Module: READ MR DATA FROM MTZ FILE >1.3.1 *** > > > **************************************************************************** > ********* ---------------------------------------------------- > >FATAL RUNTIME ERROR: Cannot open MTZ file: > >"/home/elias/mergedata/p4/ccp4/sort_p4.mtz" > >---------------------------------------------------- >-------------------- > >EXIT STATUS: FAILURE >