Hi,

your data does only contain a single volume.

Cheers-

Andreas

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Von: FSL - FMRIB's Software Library [mailto:[log in to unmask]] Im Auftrag von karo zargar
Gesendet: Montag, 7. Mai 2007 08:41
An: [log in to unmask]
Betreff: Re: [FSL] Error in running probtrack

Hi

I got the following.

/home/karo/Input_directory/data
dim1           256
dim2           256
dim3           29
dim4           26
datatype       16
pixdim1        3.0000000000
pixdim2        3.0000000000
pixdim3        3.0000000000
pixdim4        0.0000000000
cal_max        1.0000
cal_min        1.0000
glmax          0
glmin          0
origin1        0
origin2        0
origin3        0
file_type      ANALYZE-7.5

/home/karo/Input_directory/nodif
dim1           256
dim2           256
dim3           29
dim4           1
datatype       16
pixdim1        3.0000000000
pixdim2        3.0000000000
pixdim3        3.0000000000
pixdim4        0.0000000000
cal_max        1.0000
cal_min        1.0000
glmax          0
glmin          0
origin1        0
origin2        0
origin3        0
file_type      ANALYZE-7.5

/home/karo/Input_directory/nodif_brain_mask
dim1           256
dim2           256
dim3           29
dim4           1
datatype       16
pixdim1        3.0000000000
pixdim2        3.0000000000
pixdim3        3.0000000000
pixdim4        0.0000000000
cal_max        1.0000
cal_min        1.0000
glmax          0
glmin          0
origin1        0
origin2        0
origin3        0
file_type      ANALYZE-7.5

num lines in /home/karo/Input_directory/bvals
      1
num words in /home/karo/Input_directory/bvals
     26
num lines in /home/karo/Input_directory/bvecs
      3
num words in /home/karo/Input_directory/bvecs
     78

Tim Behrens <[log in to unmask]> wrote:

Hi Karo - 

Can you run bedpost_datacheck on your input directory please?

just type 

bedpost_datacheck directoryname

and tell us the output..

Cheers

T

On 6 May 2007, at 10:10, karo zargar wrote:

Dear all

In the case of running the bedpost, although the out put files are created I receive the following error:

Writing slice 0

Writing slice 1

Writing slice 2

.

.

.

Writing slice 28

when I run the probtrack with the created bedpost, no fiber track is reconstructed.

Please help me in solving the problem.

Thanks.

Karo

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