Hello,

I have DTI data collected with 68  ( 8 no diffusion scans) different directions, with two consecutive  scans, that are interleaved to cover the whole brain.  In some of them the subject moved from one scan to the other so that when I reconstruct the image there is an obvious shifts between the 2.  How can I correct for that.  Can I use Flirt  with 6 DOF only to register one to the other and then scramble them into one image?   Is this transformation going to change the voxel values due to interpolation?
thanks for the help
Paul




Paul Geha M.D.
Northwestern University
The Feinberg School of Medicine
Department of Physiology M211
303 E. Chicago Ave.
Chicago, IL 60611
Tel:312-503 2886
Fax: 312-503-5101