Dear Lu,
a very general comment: when you want to know what functions the SPM Gui uses, you can do 2 things: either set a breakpoint in spm_spm_ui, somewhere in the beginning, and walk through the entire code base step by step as you continue (in matlab debug mode), or simply press ctrl-c when you wait for some process to finish, and from the error messages you can trace back which function was currently running.
For spm2, I believe that what you want can be done with spm_coreg and when necessary spm_reslice (at least for spm2), but a 'help spm_coreg' or 'help spm_reslice' would be the definite answer.
Good luck,
Bas
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Dr. S.F.W. Neggers
Division of Brain Research
Rudolf Magnus Institute for Neuroscience
Utrecht University Medical Center
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-----Oorspronkelijk bericht-----
Van: SPM (Statistical Parametric Mapping) namens Lu Xu
Verzonden: wo 11-4-2007 2:14
Aan: [log in to unmask]
Onderwerp: Re: [SPM] use coreg .mat file with command line?
Hi, Geoffrey,
Thank you for taking time to help me!
I would like to incorporate coregistration into my existing automated
process without having to pause, manually load .mat files for
coregistration, hit "Run" on SPM GUI, wait, then go on with the rest of the
Matlab processes.
I have already written a Matlab script which generates the .mat file for
each patient's coregistration. But I have to "LOAD" the .mat files manually
on SPM GUI and hit "RUN". Is there a Matlab command (or a set of them)
which uses the .mat files and runs coregistration automatically within the
Matlab command line environment?
Please let me know if my question is yet clear.
Cheers,
Lu
-----Original Message-----
From: Geoffrey Tan [mailto:[log in to unmask]]
Sent: Tuesday, April 10, 2007 12:30 PM
To: Lu Xu
Subject: Re: [SPM] use coreg .mat file with command line?
Hi Lu,
I don't really understand your question. What do you mean by utilise?
Perhaps if you explain what you do in the GUI for one image, I can help.
Best Wishes,
Geoffrey
Lu Xu wrote:
> Hi, SPM-ers,
>
>
>
> I am trying to set up batch processing of coregistration for many
> patients. I have generated .mat files (with coreg options and image
> file specifications) for each patient. Is there a way to utilize
> these .mat files within Matlab command line window, instead of
> manually clicking on the GUI?
>
>
>
> Thanks!
>
>
>
> Lu
>
>
>
>
>
