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sure thing. i have moved onto the tbss, and the "Glm" command is not recognized. Any ideas this is now happening? thanks. david On 3/14/07, Tim Behrens <[log in to unmask]> wrote: > > No - this should be fine. Can you take a screenshot of the GUI before you > press go, and email it to me? > > Cheers > > T > On 14 Mar 2007, at 16:32, David Kideckel wrote: > > yes, i have put the correct coordinates in. does it matter what directory > i am running it from (pwd). for eg, when the image is created, does it need > to be in the same directory as other files that this tractography part > creates? > cheers. > d > > On 3/14/07, Tim Behrens <[log in to unmask]> wrote: > > > > Ah Cygwin - joy - you won't see the commands. > > Not sure what to suggest next really. Are you sure you are putting the > > coordinates in the appropriate dimensions (i.e. using mm coordinates if > > you have selected the "use mm coordinates" button, or voxel coordinates > > otherwise). > > > > T > > > > On 14 Mar 2007, at 16:25, David Kideckel wrote: > > > > no command is printed when i press Go. I'm using CygWin -- don't know if > > that matters, though. > > D > > > > On 3/14/07, Tim Behrens < [log in to unmask] > wrote: > > > > > > Dunno - It works, I promise!What is the command that is printed in > > > your terminal when you press go? > > > > > > T > > > > > > On 14 Mar 2007, at 16:12, David Kideckel wrote: > > > > > > Okay. But I am using the FA image I created with DTIFIT from the > > > practical example. > > > Sorry for asking all these simple questions... > > > David > > > > > > On 3/14/07, Tim Behrens < [log in to unmask]> wrote: > > > > > > > > Without seeing the inputs, my best guess is that your seed voxel is > > > > not in the brain. This usually happens because you have not > > > > selected the correct transformation image to take the seeds back into > > > > diffusion space. > > > > > > > > Cheers > > > > > > > > T > > > > > > > > On 14 Mar 2007, at 15:59, David Kideckel wrote: > > > > > > > > hi. > > > > I think you're right. The file is empty I am following the > > > > instructions on the webpage verbatim. Do you have any ideas why the image is > > > > empty after I am doing this step? > > > > Thanks. > > > > David > > > > > > > > On 3/14/07, Tim Behrens < [log in to unmask]> wrote: > > > > > > > > > > Just add a new image. > > > > > > > > > > It sounds as though either the file is empty, or you have the > > > > > range > > > > > set to [0,0] at the top of the window. > > > > > > > > > > Cheers > > > > > > > > > > T > > > > > On 14 Mar 2007, at 15:35, David Kideckel wrote: > > > > > > > > > > > Hello experts, > > > > > > > > > > > > I am trying to run through the FDT practical and for the > > > > > > probabilistic tractography part, the instructions indicate to > > > > > > "overlay" the connectivity distribution onto the FA map. Can > > > > > > someone please tell me where the overlay command in fsl view is? > > > > > > Otherwise, when I try to open this new file created, it doesn't > > > > > open. > > > > > > > > > > > > Sorry for the beginner-type question. > > > > > > Thank you. > > > > > > > > > > > > David Kideckel > > > > > > PhD. Candidate, University of Toronto > > > > > > Canada > > > > > > > > > > > > > > > > > > > > > > > > > > > > >