Wayne or Tim,
I have an edited PDB file that I am trying to load into CCPNMR. I get the
following error when I try and load it. Could it be that analysis needs the
header information that was deleted from the original PDB file? In analysis
I am only looking at the DNA portion of the Protien/DNA complex that was
present in the original PDB. I removed all coordiantes dealing with the
Protien, so that just the DNA would be displayed. This file is completely
compatible with molecular viewing software, such as Pymol, so I know that
the PDB file is not corrupt. Any ideas....
>>> Error: /Users/jec/Desktop/sppot1pndnaonly.pdb is not a file originating from
PDB. Cannot be read.
Trying to load structure from non-standard PDB file.
Exception in Tkinter callback
Traceback (most recent call last):
File "/sw/lib/python2.5/lib-tk/Tkinter.py", line 1403, in __call__
return self.func(*args)
File "/Applications/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/EditStructuresPopu
p.py", line 277, in importStructure
self.structure = getStructureFromFile(self.molSystem, file)
File "/Applications/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/StructureBasic.py"
, line 1183, in getStructureFromFile
structure = makeStructures(dict, molSystem, doWarnings=doWarnings)
File "/Applications/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/StructureBasic.py"
, line 1225, in makeStructures
seqIdOffset = seqIds[0] - firstSysId - seqOffset
IndexError: list index out of range
