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PhD position in analysis of genomic microarray data 
The Pulmonary Gene Research is part of the Pneumology department at the 
University Hospital Basel, Switzerland. Our research team is 
multidisciplinary involving clinicians, molecular biologists, 
biostatisticians and bioinformaticians. Our work is focused on the 
understanding of lung diseases at the genomic level using microarray 
technology. Our current collaborative projects include disease class 
prediction in sarcoidosis, biomarker identification in lung cancer and 
gene profiling of fibroblasts treated with steroids. Methodological and 
analytical aspects of our research are of highest importance. These 
include statistical modelling, multivariate data analysis and "omics" data 
mining. 
We are looking for a highly motivated PhD student with a strong background 
in biostatistics. The successful candidate should also have excellent 
English oral and written communication skills. 
The research of the open position confines all stages of the statistical 
analysis of microarray data, e.g. normalization/variance stabilization, 
modelling/removal of non-biological variation, identification of 
dysregulated genes, model validation, class prediction, etc. 
The PhD student will screen the different statistical approaches which 
have been developed so far in genomics and in other fields of science 
(e.g. chemometrics, environmetrics). A comparative analysis of the most 
appropriate techniques will be performed with microarray data. 
The candidate will be involved in the development of new statistical 
methods and the refinement of existing ones. This project should lead to 
the creation of a statistical package including a set of methods for the 
analysis of microarray data structures. 
Requirements are a Master's diploma in biostatistics or equivalent. 
Applicants should have knowledge of multivariate data analysis, and should 
be familiar with R/Bioconductor, and other open sources software 
solutions. Knowledge of C++ would be advantageous. 
Information and application with CV and letter of motivation: 
M. Brutsche, MD PhD 
Pneumologie Universitätsspital 
Petersgraben 4 
CH-4031 Basel Switzerland 
Tel. +41 61 265 51 95 
e-mail: [log in to unmask]