I never did understand the batch system in SPM99, so can't explain why version
2.2 works, but 2.3 doesn't. These are the differences between them:
67c67
< % @(#)spm_coreg_ui.m 2.2 John Ashburner FIL 00/03/24
---
> % @(#)spm_coreg_ui.m 2.3 John Ashburner FIL 01/03/22
85c85
< SPMid = spm('FnBanner',mfilename,'2.2');
---
> SPMid = spm('FnBanner',mfilename,'2.3');
146c146
< PGF = spm_input('batch',{},'target_image');
---
> PGF = spm_input('batch',{},'target_image',i);
157c157
< PFF = spm_input('batch',{},'object_image');
---
> PFF = spm_input('batch',{},'object_image',i);
166c166
< others = spm_input('batch',{},'other_image');
---
> others = spm_input('batch',{},'other_image',i);
182c182
< PGF = spm_input('batch',{},'target_image');
---
> PGF = spm_input('batch',{},'target_image',i);
191c191
< PFF = spm_input('batch',{},'reslice_image');
---
> PFF = spm_input('batch',{},'reslice_image',i);
I have attached version 2.2 to this email.
Best regards,
-John
On Tuesday 08 March 2005 20:36, Perschler, Pamela wrote:
> Hi all,
> I am trying to run a coregistration batch script (bottom) but I keep
> getting the following error. I noticed some emails about spm_coreg_ui.m
> v2.2 not having this problem. Is there any way to get that version or is
> this actually a problem with my script? Also, how do I specify Mutual
> Information Coregistration?
> Thanks for the help!!!
> Pam
>
> SPM99: spm_coreg_ui (v2.3) 14:14:59 - 08/03/2005
> ========================================================================
> Coregistering Subject 1: ??? Error using ==> spm_get_space
> Can't read matrix information from "/".
>
> Error in ==> /home/matlab/spm99/spm_coregister.m
> On line 55 ==> MG = spm_get_space(deblank(PGF(1,:)));
>
> Error in ==> /home/matlab/spm99/spm_coreg_ui.m
> On line 214 ==> spm_coregister(PGF, PFF, PGG, PFG,
> others,flags);
>
> Error in ==> /home/matlab/spm99/spm_bch.m
> On line 187 ==> spm_coreg_ui;
>
>
> %coreg.m (variable definition file for coregistration)
> %_____________________________________________________________________
> %---------------------------------------------------------------
> % user variables defined here for analysis 'coreg'
> %---------------------------------------------------------------
> anat3D = spm_get('files', './spgr', 'V1.img');
> mfunct = spm_get('files', './encode', 'meanV001.img');
> funct = spm_get('files', './encode', 'rV*.img');
>
> %---------------------------------------------------------------
> % batch variables defined here for analysis 'coreg'
> %---------------------------------------------------------------
> coreg = struct( ...
> 'subject_nb', 1, ...
> 'opt', 1, ...
> 'target_mod', 2, ...
> 'object_mod', 5, ...
> 'target_image', [anat3D], ...
> 'object_image', [mfunct], ...
> 'other_image', [funct] ...
> );
>
> > Pamela Perschler
> > Research Data Analyst
> > Department of Psychiatry
> > Center for Cognitive Medicine
> > Neuropsychiatric Institute, Rm 827
> > University of Illinois at Chicago
> > 912 S Wood St. MC913
> > Chicago IL 60612
> > Phone: 312-355-5652
> > FAX: 312-413-7856
> > e-mail: [log in to unmask]
> > http://ccm.psych.uic.edu/index.htm
