Thanks for that Torben - and sorry for the bugs.
You might like to download the most recent patches (new as of
5 minutes ago) which should also fix these problems.
Re user specified regressors - the automatic generation of
contrast vectors may not work if there are user-specified
regressors in the design. I've yet to test/fix this. In the mean
time, if you have user-spec regs, you could turn the automatic
contrast generation off.
Best,
Will.
[log in to unmask] wrote:
> Hi Will
>
> Finally I have found some time to try out the bayesian estimation in
> SPM5b. However I did not get far before I got this error:
>
>
>>>--------------------------
>
> Running "fMRI model estimation"
> Changing directory to: /Volumes/Corbusier/Data/F1757/Analysis/spm5/bayes/
> ??? Error while evaluating uicontrol Callback.
>
>
> ??? Error: File: /Applications/LocalMatlab/spm5b/spm_design_contrasts.m
> Line: 64 Column: 1
> "end" expected, "<" found.
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_config_fmri_est.m (run_est)
> On line 538 ==> cons=spm_design_contrasts(SPM);
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct1)
> On line 1372 ==> feval(prog,val);
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct1)
> On line 1380 ==> run_struct1(c.val{i});
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct1)
> On line 1380 ==> run_struct1(c.val{i});
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct)
> On line 1339 ==> run_struct1(c);
>
>
>
> And when looking in spm_design_contrasts around line 538 I found the
> following:
>
> f nf==2
> con(3).name=['Main effect of ',SPM.factor(2).name];
> <<<<<<< .mine
> con(4).name=['Interaction between ',SPM.factor(1).name,' and
> ',SPM.factor(2).name];
> end=======
> con(4).name=['Interaction: ',SPM.factor(1).name,' x
> ',SPM.factor(2).name];
> end
>
>
> I changed it to:
>
> f nf==2
> con(3).name=['Main effect of ',SPM.factor(2).name];
> %<<<<<<< .mine
> % con(4).name=['Interaction between ',SPM.factor(1).name,' and
> ',SPM.factor(2).name];
> %end=======
> con(4).name=['Interaction: ',SPM.factor(1).name,' x
> ',SPM.factor(2).name];
> end
>
> and got the following:
>
> Running "fMRI model estimation"
> Changing directory to: /Volumes/Corbusier/Data/F1757/Analysis/spm5/bayes/
> ??? Error while evaluating uicontrol Callback.
>
>
> ??? Error: File: /Applications/LocalMatlab/spm5b/spm_design_contrasts.m
> Line: 104 Column: 1
> "End of Input" expected, ">" found.
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_config_fmri_est.m (run_est)
> On line 538 ==> cons=spm_design_contrasts(SPM);
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct1)
> On line 1372 ==> feval(prog,val);
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct1)
> On line 1380 ==> run_struct1(c.val{i});
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct1)
> On line 1380 ==> run_struct1(c.val{i});
>
> Error in ==> /Applications/LocalMatlab/spm5b/spm_jobman.m (run_struct)
> On line 1339 ==> run_struct1(c);
>
> I then commented out line 1339:
>
> % What about user-specified regressors ?! - ignore for now
> %>>>>>>> .r166
>
> And now the job has started. I think what I have done should be harmless,
> but will you check it? And what does that comment about user specified
> regressors mean?
>
> Best
> Torben
>
> P.S. I am currently unable to post this to the list, but feel free to do so.
>
> Torben E. Lund
> Danish Research Centre for MR
> Copenhagen University Hospital
> Kettegaard Alli 30
> 2650 Hvidovre
> Denmark
> email: [log in to unmask]
> webpage: http://www.drcmr.dk
>
>
--
William D. Penny
Wellcome Department of Imaging Neuroscience
University College London
12 Queen Square
London WC1N 3BG
Tel: 020 7833 7475
FAX: 020 7813 1420
Email: [log in to unmask]
URL: http://www.fil.ion.ucl.ac.uk/~wpenny/
