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Please have a look at this link for LONI Debabeler software: http://www.loni.ucla.edu/Software/Software_Detail.jsp?software_id=11 LONI Debabeler manages the conversion of imaging data from one file format and convention to another. It consists of a graphical user interface to visually program the translations, and a data translation engine to read, sort and translate the input files, and write the output files to disk. SUPPORTED FILE FORMATS AND INCLUDED TRANSLATIONS:Read (decode)Write (encode)Anonymizations Translations ANALYZE 7.5 DICOM GE 5.0 MedX contour/bitmap MINC Raw data UCF XML AFNI NIFTI AFNI ANALYZE 7.5 DICOM GE 5.0 MINC SQL UCF XML NIFTI ANALYZE 7.5 DICOM GE 5.0 MINC Siemens Mosaic DICOM ANALYZE7.5-> AFNI ANALYZE 7.5 -> DICOM ANALYZE 7.5 -> MINC ANALYZE 7.5 -> NIFTI DICOM -> MINC DICOM -> NIFTI GE 5.0 -> DICOM GE 5.0 -> MINC GE 5.0 -> ANALYZE 7.5 GE 5.0 -> NIFTI MINC -> ANALYZE 7.5 MINC -> DICOM MINC -> NIFTI Raw data -> ANALYZE 7.5 Multi-frame DICOM -> MINC Multi-frame DICOM -> NIFTI Siemens Mosaic DICOM -> ANALYZE 7.5 Siemens Mosaic DICOM -> NIFTI Best, Nas Dianne Patterson <[log in to unmask]> wrote: Afni's tools, especially to3d, should also handle all three formats and converting between them. -Dianne Dianne K. Patterson Ph.D. Psychology, Room 217E 626-4571 Cognition and NeuroImaging Labs University of Arizona Tucson, AZ Quoting "Stephen J. Fromm" : > On Sun, 20 Mar 2005 16:17:34 +0000, Johannes Gerber > DRESDEN.DE> wrote: > >> dear SPMers, >> >> trying to enjoy the best of all worlds I used Brain Extraction Tool from >> FSL to get brainy brains. then I got stuck when trying to reintroduce the >> extracted volumes into SPM (which I know best). does anybody have an idea >> how to convert NIFTI-images to ANALYZE? neither MRIcro nor SPM would > digest >> it without graet unease. > > You can direct FSL to output Analyze and not NIFTI. > > (Assuming you're using UNIX or LINUX and csh or tcsh...) > > Create a directory > .fslconf > in your home directory. > > Create a file named > fsl.csh > consisting of the single line > setenv FSLOUTPUTTYPE ANALYZE > (For safety's sake, make sure you return to the next line; sometimes not > having a file end on a new line causes problems with these files). > > Then make sure that you log out and back in (or similar step to ensure > this file is actually read). The variable is correctly read if you see it > after typing > printenv | grep -i fsl > (at least this command works on my system...) > > > > >> thanks a lot! >> >> Johannes __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com