Yep - this all looks fine - and what did $thevals contain?
Cheers.
On Fri, 9 Dec 2005, Miller, Saul wrote:
> Thanks for your help. Below is the output of the commands you requested.
>
>
> avwinfo stats/pe2.hdr -r -R
>
> dim1 128
> dim2 20
> dim3 128
> dim4 1
> datatype 16
> pixdim1 -2.0000000000
> pixdim2 2.0000000000
> pixdim3 2.0000000000
> pixdim4 0.0000000000
> cal_max 2618.0000
> cal_min 0.0000
> glmax 0
> glmin 0
> origin1 128
> origin2 182
> origin3 20
> file_type ANALYZE-7.5
>
> avwinfo example_func.hdr -r -R
>
> dim1 128
> dim2 20
> dim3 128
> dim4 1
> datatype 16
> pixdim1 -2.0000000000
> pixdim2 2.0000000000
> pixdim3 2.0000000000
> pixdim4 2.0000000000
> cal_max 2618.0000
> cal_min 0.0000
> glmax 0
> glmin 0
> origin1 128
> origin2 182
> origin3 20
> file_type ANALYZE-7.5
>
> avwstats++ stats/pe2.hdr -r -R
>
> -85.311234 148.591736 -3625.955322 1350.703735
>
> avwstats++ example_func.hdr -r -R
>
> 0.000000 992.935974 0.000000 2533.000000
>
>
>
>
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]]On
> Behalf Of Stephen Smith
> Sent: Friday, December 09, 2005 10:33 AM
> To: [log in to unmask]
> Subject: Re: [FSL] Featquery error
>
>
> Hi - the featquery call looks valid; it seems that either something is
> wrong with the
> /space/elvin/1/users/hires_hippo/FSL/HRFN04/analysis/boldenc01.feat/stats/pe2
> image or the
> /space/elvin/1/users/hires_hippo/FSL/HRFN04/analysis/boldenc01.feat/example_func
> .hdr
> image. Could you run avwinfo and avwstats++ <im> -r -R on each of these.
>
> Also, you could edit $FSLDIR/bin/featquery and after the
> catch { exec sh -c "${FSLDIR}/bin/avwstats++ ....
> line insert
> puts "$thevals"
> and see what output it gives.
>
> Cheers, Steve.
>
>
>
> On Fri, 9 Dec 2005, Saul Miller wrote:
>
> > Hi,
> > I've tried to run Featquery on several different sets of data, but I keep
> > getting the same error every time. I'm not quite sure what this error is
> > refering to, so I'm not sure what to change. The error is below. Any help
> > would be appreciated. Thank you.
> > -Saul
> >
> > /usr/pubsw/packages/fsl/current/bin/featquery
> > 1 /space/elvin/1/users/hires_hippo/FSL/HRFN04/analysis/boldenc01.feat 1
> > stats/pe2 /space/elvin/1/users/hires_hippo/FSL/HRFN04/analysis/boldenc01.fea
> > t/example_func.hdr
> > expected floating-point number but got "Image"
> > while executing
> > "format %.2f $perc10 "
> > ("foreach" body line 120)
> > invoked from within
> > "foreach spaces { example_func highres standard } {
> >
> > if { $matchmask == 0 && [ imtest reg/$spaces ] &&
> > $maskdimx == [ exec sh -c "$FSLDIR/bin/avw..."
> > ("for" body line 75)
> > invoked from within
> > "for { set f 1 } { $f <= $featquery(multiple) } { incr f 1 } {
> >
> > #{{{ setup output dir and logging etc.
> >
> > set mask $origmask
> >
> > cd [ lindex $argv $f ]
> > ..."
> > (file "/usr/pubsw/packages/fsl/current/bin/featquery" line 152)
> >
>
>
--
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
