First, thanks for getting back to me.
I upgraded the machine to 1 GB of physical RAM and 1.5 GB of swap space
(with an additional 3 GB of free space left on the drive). I reran the FEEDS
test suite and am still getting the same error (see below). Is there a way
to show that this is a memory problem? (I do not see any errors saying that
I am running low on virtual memory.)
I appreciate your help,
Bennett Landman
[log in to unmask]
bennett@M205 /usr/local/feeds
$ ./RUN bet2
FSL Evaluation and Example Data Suite v3.2
start time = Wed Nov 3 17:04:14 EST 2004
hostname = M205
os = CYGWIN_NT-5.1 M205 1.5.11(0.116/4/2) 2004-09-04 23:17 i686 unknown
unknow
n Cygwin
/bin/rm -rf /usr/local/feeds/results ; mkdir /usr/local/feeds/results
Starting BET2 at Wed Nov 3 17:04:15 EST 2004
checking error on T1 brain extraction:
% error = 0.0
checking error on skull and scalp surfaces:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
Warning - not all tests passed
end time = Wed Nov 3 17:30:21 EST 2004
-----Original Message-----
From: Andreas Bartsch [mailto:[log in to unmask]]
Sent: Monday, November 01, 2004 10:29 AM
Subject: AW: [FSL] FEEDS w/ WinXP
Hi Bennett-
this is related to deficient memory preventing the generation of skull +
scalp surface images.
Increase virtual memory of let the system administer its size. That should
do it - at least if you have a minimum of 1GB physical RAM.
Best regards-
Andreas
-----Ursprüngliche Nachricht-----
Von: Bennett Landman [mailto:[log in to unmask]]
Gesendet: Mo 01.11.2004 13:18
An: [log in to unmask]
Cc:
Betreff: [FSL] FEEDS w/ WinXP
Good morning,
My FEEDS validation suite is failing for the BET2 surfaces under
winXP.
(Full feeds output included below.) I also installed the complete
cygwin
kit (as per the last message on this topic), but the problem
persists. I'd
very much appreciate any help setting up FSL under winXP.
Thanks,
Bennett Landman
[log in to unmask]
bennett@M205/usr/local/feeds
$ time ./RUN all
FSL Evaluation and Example Data Suite v3.2
start time = Sun Oct 31 22:42:49 EST 2004
hostname = M205
os = CYGWIN_NT-5.1 M205 1.5.11(0.116/4/2) 2004-09-04 23:17 i686
unknown
unknow
n Cygwin
/bin/rm -rf /usr/local/feeds/results ; mkdir
/usr/local/feeds/results
Starting PRELUDE & FUGUE at Sun Oct 31 22:42:53 EST 2004
% error = 0.0
% error = 0.0
Starting SUSAN at Sun Oct 31 22:43:02 EST 2004
% error = 0.0
Starting SIENAX (including testing BET and FLIRT and FAST) at Sun
Oct 31
22:46:1
8 EST 2004
checking error on BET:
% error = 0.0
checking error on FLIRT:
% error = 0.33
checking error on FAST:
checking error on single-image binary segmentation:
% error = 0.4
checking error on partial volume images:
% error = 0.38
% error = 0.26
% error = 0.24
checking error on SIENAX volume outputs:
% error = 0.09
% error = 0.0
% error = 0.05
% error = 0.05
% error = 0.1
Starting BET2 at Sun Oct 31 23:05:04 EST 2004
checking error on T1 brain extraction:
% error = 0.0
checking error on skull and scalp surfaces:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
Starting FEAT at Sun Oct 31 23:39:32 EST 2004
checking error on filtered functional data:
% error = 0.21
checking error on raw Z stat images:
% error = 0.26
% error = 0.22
% error = 0.28
checking error on thresholded Z stat images:
% error = 0.21
% error = 0.27
% error = 0.33
checking error on position of largest cluster of Talairached
zfstat1:
% error = 0.01
% error = 0.02
% error = 0.08
% error = 0.01
% error = 0.0
% error = 0.04
Starting MELODIC at Mon Nov 1 00:00:58 EST 2004
% error = 0.0
Starting FDT (bedpost) at Mon Nov 1 00:21:50 EST 2004
checking error on bedpost output:
% error = 0.25
% error = 0.01
% error = 0.07
% error = 0.07
% error = 0.1
% error = 0.22
% error = 0.22
Warning - not all tests passed
end time = Mon Nov 1 01:07:15 EST 2004
real 144m32.312s
user 0m0.180s
sys 0m0.980s
