Hello Steve,
Thank you very much for your suggestion.
Unfortunately, I was not able to make featquery run by
modifiying the script as you suggested. I am currently
using Cygwin with tclsh8.4 on it .
Still the same error message stating that the mask size
doesn't match any of the images in the FEAT directory.
Anyway, thanks again for the ready support.
Best,
Leonardo
On Wed, 11 Aug 2004 16:50:50 +0100
Stephen Smith <[log in to unmask]> wrote:
>Thanks to everyone, particularly Michael Lipton, for
>helping look into
>this. It turns out to be a bug in the version of TCL
>that is bundled with
>Cygwin.
>
>I _think_ that an easy fix is the following. It relies on
>your version of
>Cygwin being sufficiently recent to have tclsh8.4 come
>with it - you can
>check this with:
>ls -l /bin/tclsh84.exe
>to see if it's there.
>
>The fix for Featquery is to edit
>/usr/local/fsl/bin/featquery
>and near the top change
>${FSLDIR}/bin/tclsh
>to
>/bin/tclsh
>
>Feedback appreciated!
>
>Cheers, Steve.
>
>
>On Mon, 9 Aug 2004, Leonardo Bonilha wrote:
>
>> Dear Stephen M. Smith and colleagues,
>>
>> I recently confronted myself with the same problem that
>>motivated Anda van
>> Stegeren and Kerstin Preuschoff to write to the list
>>earlier this year: I
>> was not able to make featquery (working under Windows
>>XP/Cygwin) to run
>> properly either using a mask or by trying to define
>>standard space
>> coordinates.
>>
>> Shortly, what I did was to create a mask with MRIcro
>>using the
>> example_func.img, or alternatively a high resolution
>>image in standard
>> space. Within both cases, I received a message stating
>>that the mask size
>> did not match any of the images in the FEAT directory.
>>Just to ensure that
>> I was wasn't using different dimension-sized images, I
>>then used avwhd and
>> fine tuned the images (the mask and its matching image)
>>to be exactly the
>> same. Yet, the same error remained.
>>
>> Suspecting that this could be due to a Windows/Cygwin
>>version bug, I then
>> tried to run the same analysis, i.e., to use exactly the
>>same masks, this
>> time using Linux (Suse9.1). And it worked uneventfully.
>>
>> Therefore it seems that this problem with featquery
>>appears to be
>> restricted to the Windows version of FSL.
>>
>> Best wishes
>>
>> Leonardo Bonilha
>>
>> Div of Psychiatry and
>> School of Psychology
>> University of Nottingham, NG7 2RD
>> Tel: +44 (0) 115 - 95 -15308
>> http://www.psychology.nottingham.ac.uk/staff/lxb/
>>
>
> Stephen M. Smith DPhil
> Associate Director, FMRIB and Analysis Research
>Coordinator
>
> Oxford University Centre for Functional MRI of the Brain
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
>
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
Leonardo Bonilha
Div of Psychiatry and
School of Psychology
University of Nottingham, NG7 2RD
Tel: +44 (0) 115 - 95 -15308
http://www.psychology.nottingham.ac.uk/staff/lxb/
This message has been scanned but we cannot guarantee that it and any
attachments are free from viruses or other damaging content: you are
advised to perform your own checks. Email communications with the
University of Nottingham may be monitored as permitted by UK legislation.
