Hi,
I just wanted to point out that it is generally *unnecessary* to have
a fsl.sh file in your home directory. It is only necessary if you do
not like the defaults provided by the central file and wish to
override them with your own settings. Only in this case do you
need to have a file in ${HOME}/.fslconf and if you do put a file
in there, do *not* copy the one from $FSLDIR/etc/fslconf as
otherwise this will create infinite loops.
All the best,
Mark
Stephen Smith wrote:
>Hi - no, we didn;t change anything in these files - maybe your original
>download was incomplete/corrupted.
>
>Cheers.
>
>
>On Thu, 21 Oct 2004, Matthew Hoptman wrote:
>
>
>
>>I changed $FSLDIR/etc/fslconf/fsl.sh to fsl.sh.old and deleted
>>$HOME/.fslconf/fsl.sh. By the way, I then reverted
>>$FSLDIR/etc/fslconf/fsl.sh.old to fsl.sh and it worked.
>>
>>After I got your email, I reinstalled FSL (from fsl-3.2-redhat9.tar.gz),
>>reinstalled the patch and sourced $FSLDIR/etc/fslconf/fsl.sh and everything
>>worked fine. Could something in the patch have fixed this?
>>
>>On Tue, 19 Oct 2004 07:24:18 +0100, Mark Jenkinson <[log in to unmask]> wrote:
>>
>>
>>
>>>Hi Matthew,
>>>
>>>I'm confused.
>>>Which file did you rename to fsl.sh.old?
>>>Where was it located?
>>>
>>>The straightforward installation should not create
>>>an infinite loop and we are quite concerned that
>>>others might have this problem.
>>>
>>>Can you please send us more details of where you
>>>installed fsl, how you did your setup and what
>>>you did to fix it?
>>>
>>>Thanks,
>>> Mark
>>>
>>>
>>>On 19 Oct 2004, at 00:34, Matthew Hoptman wrote:
>>>
>>>
>>>
>>>>Hi,
>>>> I seem to have gotten the script to work. I must have set up some
>>>>an
>>>>infinite loop, and when I renamed the script to fsl.sh.old, voila, it
>>>>worked.
>>>>
>>>>
>
>--
> Stephen M. Smith DPhil
> Associate Director, FMRIB and Analysis Research Coordinator
>
> Oxford University Centre for Functional MRI of the Brain
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
>
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>
>
