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When I run FEATQuery (under cygwin) using a mask file created in FSLView, it fails to run. Two text files are created in the FEATQuery directory. One is empty. The other contains only the following text: Processing FEAT directory 1 : C:/cygwin/home/lipton/data/20040624eppie/FEAT/fmrib.feat Error - mask size doesn't match any of the images in the FEAT directory I ran avwhd to be sure the mask has the same dimensions as my filtered_func_data. It does. I also made sure that both the .hdr and .img portions of my mask are in the FEAT directory. I can open the same mask in FSLView without any problem. Any help will be much appreciated, Thanks, Michael