Hi Niels,
thank you for chiming in. When I do what you suggest, I get the expected syntax and a really long list of filenames (with the full path). Here are the first few lines (it's wrapping around in this message but it's all one line of course..).
concat_bvars bvars_R_Amyg.bvars /u/megascratch/m/0001/unprocessed/3T/T1w_MPR1/0001_3T_T1w_MPR1.anat/first_results/T1_first-R_Amyg_first.bvars /u/megascratch/m/0002/unprocessed/3T/T1w_MPR1/0002_3T_T1w_MPR1.anat/first_results/T1_first-R_Amyg_first.bvars /u/megascratch/m/0003/unprocessed/3T/T1w_MPR1/0003_3T_T1w_MPR1.anat/first_results/T1_first-R_Amyg_first.bvars /u/megascratch/m/0004/unprocessed/3T/T1w_MPR1/0004_3T_T1w_MPR1.anat/first_results/T1_first-R_Amyg_first.bvars /u/megascratch/m/0005/unprocessed/3T/T1w_MPR1/0005_3T_T1w_MPR1.anat/first_results/T1_first-R_Amyg_first.bvars /u/megascratch/m/0006/unprocessed/3T/T1w_MPR1/0006_3T_T1w_MPR1.anat/first_results/T1_first-R_Amyg_first.bvars
As far as I can tell the paths look right (if I take any one and "ls" it, it does find the expected file), there is no "pesky" white space or special character beyond underscores, and the command is as I'd expect it to be.
Where else can I look to try to troubleshoot this?
thank you
martin
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