Dear Batel,
yes, there is a bug in eddy's reporting of errors, which sometimes leads to these nonsensical messages. It has been fixed, but the fixed version is not released yet.
The following lines, " Could not open matrix file eddy_corrected_images.eddy_rotated_bvecs" and forward, do not come from eddy, but rather from additional commands that your script is attempting to run, but cannot since it doesn't have the output from eddy.
Can I please ask you to run "just" the eddy command, and add -v (--verbose) to the eddy command. And after it crashes, please cut and paste the output to the screen to me. That will allow me to see if it is a simple matter of some problem with the input data or not.
Best regards Jesper
On 18/11/2023, 21:20, "FSL - FMRIB's Software Library on behalf of Batel Yifrah" <[log in to unmask] on behalf of [log in to unmask]> wrote:
Hello everyone,
I've been running topup and eddy, and they performed excellently. However, I've encountered an issue when attempting to run eddy on one of my patients. I'm receiving a strange error message:"
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EDDY::: Eddy failed with message �aF]
Could not open matrix file eddy_corrected_images.eddy_rotated_bvecs
Image Exception : #63 :: No image files match: eddy_corrected_images
Image Exception : #22 :: Failed to read volume eddy_corrected_images
Error : No image files match: eddy_corrected_images
terminate called after throwing an instance of 'std::runtime_error'
what(): Failed to read volume eddy_corrected_images
Error : No image files match: eddy_corrected_images
/home/kmtadmin/fsl/share/fsl/bin/dtifit: line 2: 697 Aborted /home/kmtadmin/fsl/bin/dtifit "$@"
I've carefully reviewed all my files, and they seem to be fine. Any thoughts on what might be causing the issue?
Any assistance would be greatly appreciated.
Thanks,
Batel
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