Note: this message is reposted because I am having trouble with receiving emails in my other account.
Hello!
### Issue 1 ###
I am trying to run eddy after performing gradient fieldmap correction with FEAT. I ran this command:
$ eddy --imain=filtered_func_data.nii.gz --mask=mask.nii.gz --acqp=acqparams.txt --index=index.txt --bvecs=C1_bvec.bvec --bvals=C1_bval.bval --field=fmap_rads --slm=linear --out=C1_preproc
Unfortunately, I got this error:
Image Exception : #3 :: Attempted to add images of different sizes
Attempted to add images of different sizes
terminate called after throwing an instance of 'EDDY::EddyException'
I checked the dimensions of the main MRI data and the mask which are the same.
### Issue 2 ###
I used MRtrix3 to pre-process some images with this command:
$dwifslpreproc C6_denois.mif C6_preproc.mif -rpe_none -nocleanup -pe_dir pa -readout_time 0.0632 -eddy_options " --slm=linear"
This is from the eddy_openmp_failure_output.txt file:
Reading images
@@w3 U
EDDY::: Eddy failed with message
Please let me know what steps I can take to troubleshoot.
Sincerely,
Rosemarie Le
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