Dear Manoj,
I usually utilize SALIGN to produce structure-based sequence alignments:
https://modbase.compbio.ucsf.edu/salign/
Ciao
Pietro
On 02-03-2023 08:45, Manoj N wrote:
> Dear all,
>
> We want to generate a structure-based multiple
> sequence alignment for a large number of homologous structures (>100).
>
>
> What are the available programs (stand-alone or webserver) to do this?
>
>
> Thank you,
>
> Best wishes,
>
> Manoj
>
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Dr. Pietro Roversi, PhD
Italian National Research Council (CNR)
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Adjunct Lecturer in Mathematical Modeling for Biology
Master in Quantitative Biology,
Department of Biosciences, University of Milano, Italy
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URL: https://www.unimi.it/en/ugov/person/pietro-roversi
Honorary Lecturer at LISCB - Department of Molecular and Cell Biology
Leicester University, Lancaster Rd.
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