Dear Fabio,
just guessing from the filenames, the alignment issue seems to be
between different subjects of a group analysis. Therefore, spatial
preprocessing within each subject should be fine, but you seem to have
slightly different orientations across subjects after spatial
normalisation. Usually, after spatial normalisation all images should
be in the space defined by your template/prior/reference images. Did
you change anything in your processing setup between e.g. subject 64-
22-002_1 and 64-22-003_1?
If you are really sure everything is ok with preprocessing, you may
want to copy spatial orientation information from the first image to
the other ones using spm_get_space. Note however, that this might
confuse SPM when you try to look at first level results for different
subjects because there might be mismatches between SPM.mat image
information and image headers. Something like this should work:
imgs = cellstr(spm_select); % Select all images
M = spm_get_space(imgs{1}); % Get orientation of first image in list
for ci = 2:numel(imgs) % loop over the other images
spm_get_space(imgs{ci}, M); % Set orientation to the first image
end;
Best,
Volkmar
Am Donnerstag, dem 12.01.2023 um 15:03 +0000 schrieb Bernardoni, Fabio:
> Hi Volkmar,
>
> thank you for your hints. I use the spacetime realigner
> (https://nipype.readthedocs.io/en/latest/api/generated/nipype.interfaces.nipy.preprocess.html#roche2011
> ) which performs motion correction and slice timing/interpolation
> simultaneously (https://ieeexplore.ieee.org/document/5737791). Isn t
> this enough and the equivalent of the Realign:Reslice step that you
> propose? To me it seems the differences are so small, that they might
> arise from computing errors:
>
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-002_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-003_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-004_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-005_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-006_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-007_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-008_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-026_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-027_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-028_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-029_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-030_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-031_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-041_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-042_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-043_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-044_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-046_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-075_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-078_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-080_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-081_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-087_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-098_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-099_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-102_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-104_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-105_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-106_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-163_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98965 -75.8033]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-301_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98975 -75.8053]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-306_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98977 -75.8057]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-308_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98994 -75.8088]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-309_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98983 -75.8068]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-311_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98977 -75.8056]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-312_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.9897 -75.8044]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-318_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99006 -75.811]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-319_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98961 -75.8026]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-320_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98993 -75.8087]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-324_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.9897 -75.8042]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-325_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98979 -75.806]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-326_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98967 -75.8038]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-327_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98983 -75.8067]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-329_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98974 -75.8051]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-330_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98991 -75.8084]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-332_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98959 -75.8021]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-337_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.9901 -75.812]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-338_1/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-002_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-003_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-004_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-005_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-006_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-007_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-008_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-026_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-027_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-028_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-029_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-030_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-031_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-041_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-042_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-043_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-044_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-046_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-075_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-078_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-080_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-087_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-098_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-099_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-102_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-104_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-105_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.81]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-106_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.99 -75.8099]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-163_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98986 -75.8074]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-301_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98965 -75.8034]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-311_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98961 -75.8026]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-318_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98972 -75.8047]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-320_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98977 -75.8057]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-324_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98984 -75.807]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-325_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98995 -75.809]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-326_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98989 -75.8078]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-329_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98988 -75.8078]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-330_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98984 -75.8069]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-332_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98976 -75.8055]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-337_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
> [-3 0 0 93; 0 3 0 -129; 0 0 3.98986 -75.8074]
> /scratch/ws/0/bernardo-asdtom/asdtom/firstlevel_output/dartel4d/64-
> 22-338_2/contrasts/_modelname_VID_PTR_Block/_fwhm_8/con_0007.nii
>
>
>
>
> Dr. Fabio Bernardoni
> wiss. Mitarbeiter
>
> Division of Psychological & Social Medicine and Developmental
> Neurosciences
> http://www.transdenlab.de/; http://www.uniklinikum-dresden.de/psm
> +49 (0351) 458-5245
> Universitätsklinikum Carl Gustav Carus
> an der Technischen Universität Dresden
> Anstalt des öffentlichen Rechts des Freistaates Sachsen
> Fetscherstraße 74, 01307 Dresden
> http://www.uniklinikum-dresden.de
>
> Vorstand: Prof. Dr. med. D. M. Albrecht (Sprecher), Katrin Erk
> Vorsitzender des Aufsichtsrates: Prof. Dr. G. Brunner
> USt.-IDNr.: DE 140 135 217, St.-Nr.: 203 145 03113
>
> http://www.uniklinikum-dresden.de
> Vorstand: Prof. Dr. med. D. M. Albrecht (Sprecher), Wilfried E. B.
> Winzer
> Vorsitzender des Aufsichtsrates: Prof. Dr. G. Brunner
> USt.-IDNr.: DE 140 135 217, St.-Nr.: 203 145 03113
>
> ________________________________________
> Von: SPM (Statistical Parametric Mapping) <[log in to unmask]> im
> Auftrag von Volkmar Glauche <[log in to unmask]>
> Gesendet: Montag, 9. Januar 2023 14:59:42
> An: [log in to unmask]
> Betreff: Re: [SPM] spm_check_orientations error
>
> Dear Fabio,
> if you apply any kind of motion correction, even if there are only
> minimal effects, you will have to interpolate/reslice your images at
> least once during spatial processing. For group studies, this usually
> happens when applying a spatial transformation into MNI space. If you
> intend to run a statistics in native space of each subject, you will
> want to use Realign:Reslice after estimating the motion parameters.
> Best,
> Volkmar
|