Hello,
I'm trying to install the latest fsl version on our compute system. However, I keep running into the same error each time.
11:48:15 fslinstaller.py: 162: This command returned an error: /opt/fsl/6.0.6/bin/mamba env update -n base -f /tmp/tmpy7eu57mp/fsl-6.0.6.2_linux-64.yml
Which in the error log shows:
'fsl-wire==1.0.0', 'fsl-xtract==1.5.1', 'fsl-xtract_data==1.3.4', 'fsl-znzlib==2111.0', 'ghalton==0.6.1', 'hlsvdpropy==2.0.1', 'libopenblas==0.3.18[build=*openmp*]', 'make', 'nidmresults==2.1.0', 'nidmresults-fsl==2.2.0', 'numpy=1.21', 'openslide-python==v1.1.2', 'pkg-config', 'python=3.10', 'tk=8.6', 'vtk==9.1', 'wxpython=4.1', 'zlib=1.2', 'fsl-cudabasisfield-cuda-10.2==1.1.1', 'fsl-eddy-cuda-10.2==2111.0', 'fsl-fdt-cuda-10.2==2202.5', 'fsl-ptx2-cuda-10.2==2111.4']
11:46:55 fslinstaller.py: 929: [stderr]: Traceback (most recent call last):
11:46:55 fslinstaller.py: 929: [stdout]:
11:46:55 fslinstaller.py: 929: [stderr]: File "/opt/fsl/6.0.6/lib/python3.10/site-packages/conda/exceptions.py", line 1129, in __call__
11:46:55 fslinstaller.py: 929: [stdout]:
11:46:55 fslinstaller.py: 929: [stderr]: return func(*args, **kwargs)
11:46:55 fslinstaller.py: 929: [stderr]: File "/opt/fsl/6.0.6/lib/python3.10/site-packages/conda_env/cli/main.py", line 80, in do_call
11:46:55 fslinstaller.py: 929: [stderr]: exit_code = getattr(module, func_name)(args, parser)
11:46:55 fslinstaller.py: 929: [stderr]: File "/opt/fsl/6.0.6/lib/python3.10/site-packages/conda/notices/core.py", line 72, in wrapper
11:46:55 fslinstaller.py: 929: [stderr]: return_value = func(*args, **kwargs)
11:46:55 fslinstaller.py: 929: [stderr]: File "/opt/fsl/6.0.6/lib/python3.10/site-packages/conda_env/cli/main_update.py", line 130, in execute
11:46:55 fslinstaller.py: 929: [stderr]: result[installer_type] = installer.install(prefix, specs, args, env)
11:46:55 fslinstaller.py: 929: [stderr]: File "/opt/fsl/6.0.6/lib/python3.10/site-packages/mamba/mamba_env.py", line 153, in mamba_install
11:46:55 fslinstaller.py: 929: [stderr]: transaction.fetch_extract_packages()
11:46:55 fslinstaller.py: 929: [stderr]: RuntimeError: Resource temporarily unavailable
AND
11:46:55 fslinstaller.py: 929: [stderr]: conda version : 22.9.0
11:46:55 fslinstaller.py: 929: [stderr]: conda-build version : not installed
11:46:55 fslinstaller.py: 929: [stderr]: python version : 3.10.6.final.0
11:46:55 fslinstaller.py: 929: [stderr]: virtual packages : __linux=4.19.94=0
11:46:55 fslinstaller.py: 929: [stderr]: __glibc=2.17=0
11:46:55 fslinstaller.py: 929: [stderr]: __unix=0=0
11:46:55 fslinstaller.py: 929: [stderr]: __archspec=1=x86_64
11:46:55 fslinstaller.py: 929: [stderr]: base environment : /opt/fsl/6.0.6 (writable)
11:46:55 fslinstaller.py: 929: [stderr]: conda av data dir : /opt/fsl/6.0.6/etc/conda
11:46:55 fslinstaller.py: 929: [stderr]: conda av metadata url : None
11:46:55 fslinstaller.py: 929: [stderr]: channel URLs : https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/linux-64
11:46:55 fslinstaller.py: 929: [stderr]: https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/noarch
11:46:55 fslinstaller.py: 929: [stderr]: https://conda.anaconda.org/conda-forge/linux-64
11:46:55 fslinstaller.py: 929: [stderr]: https://conda.anaconda.org/conda-forge/noarch
11:46:55 fslinstaller.py: 929: [stderr]: package cache : /opt/fsl/6.0.6/pkgs
11:46:55 fslinstaller.py: 929: [stderr]: /home/mrstats/maamen/.conda/pkgs
11:46:55 fslinstaller.py: 929: [stderr]: envs directories : /opt/fsl/6.0.6/envs
11:46:55 fslinstaller.py: 929: [stderr]: /home/mrstats/maamen/.conda/envs
11:46:55 fslinstaller.py: 929: [stderr]: platform : linux-64
11:46:55 fslinstaller.py: 929: [stderr]: user-agent : conda/22.9.0 requests/2.28.1 CPython/3.10.6 Linux/4.19.94-300.el7.x86_64 centos/7.6.1810 glibc/2.17
11:46:55 fslinstaller.py: 929: [stderr]: UID:GID : 10013:668
11:46:55 fslinstaller.py: 929: [stderr]: netrc file : None
11:46:55 fslinstaller.py: 929: [stderr]: offline mode : False
We're running Centos 7
I've tried with python 3.6, 3.7 and 3.10
Thanks,
Maarten
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