Dear FSL users,
When I was running eddy_openmp (version FSL/6.0.0) I got following error:
Segmentation violation, Address not mapped, Offending address = 0x8
eddy_openmp arma::Mat<double>::Mat(arma::Mat<double> const&) [0x54de7c]
eddy_openmp TOPUP::TopupFileReader::MovePar(unsigned int) const [0x5f4d17]
eddy_openmp EDDY::ECScanManager::ECScanManager(std::string const&, std::string const&, std::string const&, std::string const&, std::string const&, std::string const&, std::string const&, std::string const&, EDDY::ECModel, EDDY::ECModel, std::vector<unsigned int, std::allocator<unsigned int> > const&, EDDY::PolationPara const&, EDDY::MultiBandGroups, bool) [0x5e5ccb]
eddy_openmp main [0x50e5d8]
/lib64/libc.so.6 __libc_start_main [0x2b8d524b4555]
This is the command line I used for a single participant:
eddy_openmp --imain=sub-0005_dwi_CUT.nii.gz --mask=hifi_b0_brain_mask --acqp=acqparams.txt --index=index.txt --bvecs=sub-0005_dwi.bvec --bvals=sub-0005_dwi.bval --topup=TOPUP_fieldcoef --out=sub-0005_dwi_eddycorrect
I have 109 volumes in total, so in the index file it has 109 1s. I am running it on a computing cluster.
Appreciate any help!
Meishan
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