Hi,
I used the following method to run FUGUE on EPI(fmri) and it did not work properly for my data. I have a magnitude image, and a real field map. I also used flirt to get both images into one space.
fslmaths realfmap -mul 6.28 realfmap_rads
fugue --loadfmap=realfmap_rads -m --savefmap=realfmap_rads_reg
fugue -i EPI_PA.nii --dwell=0.00049246 --loadfmap=realfmap_rads_reg.nii.gz -u correct_EPI
Could you please advise?
Thank you.
Best,
Ru
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