Hello Matthew,
Thank you for your prompt reply!
The FSL version is 6.0.6.1.
Firstly, I was trying to run Mrtrix3 but the script failed to run the 5ttgen (segmentation step). After that, I inspected the Mrtrix3 script and noticed that the SIENA was not working well. I've replicated the command in the FSL and didn't work as well!
I really appreciate your time!
Sincerely,
Diego
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/usr/local/fsl/bin/bet /Volumes/DCF_1tb/Processamento/Projects/Connectome_article2/p003/t1 /Volumes/DCF_1tb/Processamento/Projects/Connectome_article2/p003/t1_brain -S -f 0.5 -g 0
/usr/local/fsl/bin/bet failed during command:/Volumes/DCF_1tb/Processamento/Projects/Connectome_article2/p003/t1 /Volumes/DCF_1tb/Processamento/Projects/Connectome_article2/p003/t1_brain -S -f 0.5 -g 0
Fatal error: cannot open file: -
Function: (main)
Fatal error: cannot open file: -
Function: (main)
Fatal error: cannot open file: -
Function: (main)
Fatal error: cannot open file: -
Function: (main)
Finished
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