Hi Alister,
thanks for clearing up!
Just how exactly do I reconstruct reoriented pseudo subtomograms? I thought that that was what the now missing --apply_angles argument was for in the previous Relion version. Is that equivalent to just changing the column names from rlnAngleRot/Tilt/Psi to rlnTomoSubtomogramRot/Tilt/Psi in the input particles file?
Best regards,
David
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