Dear Jingyi,
Depending on your system, your administrator will need to run either:
sudo yum install bc
sudo apt-get install dc
( this will be an extremely routine action for them ).
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 15 Aug 2022, at 04:10, Jingyi Wang <[log in to unmask]> wrote:
>
> Dear Matthew,
>
> Thank you so much for your reply. Can I ask for a link for installing the “dc” program? I am not sure my cluster administrator knows what a “dc” program.
>
> Jingyi
>
> On Sun, Aug 14, 2022 at 1:05 PM Matthew Webster <[log in to unmask]> wrote:
> Hello Jingyi,
> It looks like the “dc” program is not present on your cluster - this is a extremely common unix utility, so I would contact your cluster administrator to ask if it can be installed.
>
> Kind Regards
> Matthew
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
>> On 12 Aug 2022, at 23:47, Jingyi Wang <[log in to unmask]> wrote:
>>
>> Hello fsl experts,
>>
>> I am having trouble with bet command. I am using the unix system on cluster. When I run bet without options it is working fine. But if I have bet with options an error message pops out.
>>
>> This is my command (I already set the environment varible for fsl).
>> bet $rest_dir/$anat.nii.gz $rest_dir/T1High_brain -R -f 0.4 -g -0.3
>>
>> This is the error message
>> /sw/fsl/bin/bet: line 265: dc: command not found
>> /sw/fsl/bin/bet failed during command:/28andMe_process/results/01/trial/T1High.nii.gz /JacobLabData/28andMe_process/results/01/trial/T1High_brain -R -f 0.4 -g -0.3
>>
>> If I use bet $rest_dir/$anat.nii.gz $rest_dir/T1High_brain, no error message.
>>
>>
>> Any insights could help. Thanks in advance.
>>
>> Jingyi
>>
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