Thanks so much! I think I'm having some trouble here. I've created ROI's in the MNI space I used as a reference when doing FDT registration. I wanted to register them back into the diffusion space. I've been trying the following command:
applywarp -i MNI_ROI.nii.gz -r diffusion_space_reference.nii.gz -o diffusion_ROI -w standard2diff_warp.nii.gz --postmat=standard2diff.mat
However, when I try to look at the ROI using fsleyes, I don't see the ROI at all. Is there something wrong with the command I'm using?
Thanks!
-Matt
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