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Subject:

Re: Unable to run 3D PASL processing using BASIL

From:

Michael Chappell <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Tue, 30 Aug 2022 09:31:01 +0000

Content-Type:

text/plain

Parts/Attachments:
Parts/Attachments

text/plain (469 lines) 

Based on that preview it looks like the data might be control then label, rather than label then control - could you try changing that option and seeing if that helps?

Michael

> On 26 Aug 2022, at 05:02, Ashwati Vipin <[log in to unmask]> wrote:
> 
> Hi Michael,
> 
> I've run it before as a label/control option but I run into the same errors. Please find the run log attached as well as the screenshots of the BASIL toolbox and the output. I'm not sure how to proceed. The image looks quite different from the original raw image when I use the label/control option. 
> 
> ########################################################################
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> To unsubscribe from the FSL list, click the following link:
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> This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
> <Screenshot 2022-08-26 at 11.30.24 AM.jpg><Screenshot 2022-08-26 at 11.30.36 AM.jpg><Screenshot 2022-08-26 at 11.30.41 AM.jpg><Screenshot 2022-08-26 at 11.30.49 AM.jpg>{\rtf1\ansi\ansicpg1252\cocoartf2638
> \cocoatextscaling0\cocoaplatform0{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
> {\colortbl;\red255\green255\blue255;}
> {\*\expandedcolortbl;;}
> \paperw11900\paperh16840\margl1440\margr1440\vieww11520\viewh8400\viewkind0
> \pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0
> 
> \f0\fs24 \cf0 /usr/local/fsl/bin/oxford_asl -i /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/BIOC_0002_v01_3DASL.nii --iaf tc --ibf rpt --bolus 1.8 --rpts 4 --tis 1.99 --fslanat /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struc.anat -c /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/BIOC_0002_v01_PD.nii --cmethod voxel --tr 6 --cgain 1 -o /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01 --bat 0 --t1 1.65 --t1b 1.65 --alpha 0.98 --spatial --fixbolus --artoff --wp\
> rm: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/logfile: No such file or directory\
> oxford_asl -i /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/BIOC_0002_v01_3DASL.nii --iaf tc --ibf rpt --bolus 1.8 --rpts 4 --tis 1.99 --fslanat /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struc.anat -c /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/BIOC_0002_v01_PD.nii --cmethod voxel --tr 6 --cgain 1 -o /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01 --bat 0 --t1 1.65 --t1b 1.65 --alpha 0.98 --spatial --fixbolus --artoff --wp\
> OXFORD_ASL - running\
> Version: v4.0.27-dirty Tue Jul 13 10:09:25 2021\
> Input file: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/BIOC_0002_v01_3DASL.nii\
> Saving results in natve (ASL aquisition) space to /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space\
> Saving results in structural space to /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struct_space\
> Analysis in white paper mode\
> Pre-processing\
> Using structural images (bias corrected) from fsl_anat: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struc.anat\
> Standard brain is: /usr/local/fsl/data/standard/MNI152_T1_2mm\
> Structural to standard transformation warp: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struc.anat/T1_to_MNI_nonlin_coeff.nii.gz\
> Number of TIs in list: 1\
> TIs list: --ti1=1.99\
> Input ASL format is: tc\
> Input block format is: rpt\
> Number of voxels is:589824\
> Number of repeats in data is:4\
> Outputting ASL data mean at each TI\
> Done.\
> Number of inversion times: 1\
> Number of timepoints in data: 4\
> Number of repeats in data: 4\
> Operating in Single TI mode\
> 1.99 1.99 1.99 1.99\
> 1.99\
> Using FSL_ANAT outputs at: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struc.anat\
> Bias field extracted from /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struc.anat sucessfully\
> Defaulting brain extracted mean ASL image as initial registration reference\
> Using brain extracted mean ASL image as initial registration reference\
> Creating WMseg for BBR registration\
> Performing registration\
> Using /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/meanasl_brain as base for inital registration\
> Initial registration is FLIRT only\
> Performing registration\
> ASL_REG\
> Input file is: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/meanasl_brain\
> Registration MAIN stage (FLIRT)\
> Tidying up\
> ASL_REG - Done.\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/tmp_asl_reg/lowtohigh"\
> Generating calibration image in structural space\
> Creating mask\
> Generating dilated mask for initial BASIL runs\
> \
> WARNING:: Inconsistent orientations for individual images in pipeline!\
>          Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!\
> \
> Image Exception : #3 :: Attempted to multiply images of different sizes\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Attempted to multiply images of different sizes\
> /usr/local/fsl/bin/oxford_asl: line 1941:  5659 Abort trap: 6           fslmaths $tempdir/calib -mas $tempdir/mask_dil $tempdir/calib\
> T1: 1.65\
> T1b: 1.65\
> Bolus duration: 1.8\
> Setting up BASIL\
> pASL model\
> Fixed bolus duration\
> Variable arterial arrival time\
> Setting prior/initial (tissue/gray matter) bolus arrival time to 0\
> Single volume: informative noise prior will be used\
> Using SNR of 10 to set noise std dev\
> Runtime error (func=(main), adr=29): Square root of a negative number\
> Using a prior noise sd of:\
> Instructing BASIL to use automated spatial smoothing\
> BASIL options (/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil_options.txt):\
> ----\
> #FABBER options created by Oxford_asl --t1=1.65 --t1b=1.65 --tau=1.8 --bat=0 --prior-noise-stddev= --save-model-fit\
> ----\
> Calling BASIL on data - conventional perusion image\
> Initial run of BASIL on data where we have avareged all repeats at each TI\
> Run time basil options:\
> --spatial\
> ---\
> Creating output directory: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil\
> STEP 1: VB - Tissue\
> ----------------------\
> Welcome to FABBER v4.0.10-dirty\
> ----------------------\
> Last commit: Wed May 19 11:36:18 2021\
> Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step1/logfile\
> NEWMAT exception caught in fabber:\
>  Invalid value given for option: = (Failed to convert to required type)\
> \
> Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step1/logfile\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step1/finalMVN"\
> STEP 2: Spatial VB Tissue - init with STEP 1\
> ----------------------\
> Welcome to FABBER v4.0.10-dirty\
> ----------------------\
> Last commit: Wed May 19 11:36:18 2021\
> Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/logfile\
> NEWMAT exception caught in fabber:\
>  Invalid value given for option: = (Failed to convert to required type)\
> \
> Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/logfile\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/finalMVN"\
> End.\
> Using BASIL step /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/mean_ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/mean_ftiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5739 Abort trap: 6           fslmaths $\{finalstep\}/mean_ftiss -thr 0 $2/ftiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/mean_delttiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/mean_delttiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5740 Abort trap: 6           fslmaths $\{finalstep\}/mean_delttiss -thr 0 $2/delttiss\
> Fabber variance calculator\
> Working in /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2\
> Calculating variance for: ftiss\
> FABBER: MVNtool\
> FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/mask_dil'\
> FabberRunDataNewimage::Dimensions: x=128, y=128, z=36, vols=1\
> FabberRunDataNewimage::Voxel size: x=1.875mm, y=1.875mm, z=3.87471mm, TR=1 sec\
> FabberRunDataNewimage::Intents: 0, 0, 0, 0\
> FabberRunDataNewimage::Setting coordinates from extent\
> Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/finalMVN (File is invalid or does not exist)\
> Calculating variance for: delttiss\
> FABBER: MVNtool\
> FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/mask_dil'\
> FabberRunDataNewimage::Dimensions: x=128, y=128, z=36, vols=1\
> FabberRunDataNewimage::Voxel size: x=1.875mm, y=1.875mm, z=3.87471mm, TR=1 sec\
> FabberRunDataNewimage::Intents: 0, 0, 0, 0\
> FabberRunDataNewimage::Setting coordinates from extent\
> Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/finalMVN (File is invalid or does not exist)\
> Done.\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/var_ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/var_ftiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5751 Abort trap: 6           fslmaths $\{finalstep\}/var_ftiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_ftiss $2/var_ftiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/var_delttiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/var_delttiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5752 Abort trap: 6           fslmaths $\{finalstep\}/var_delttiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_delttiss $2/var_delttiss\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/basil/step2/finalMVN"\
> Main run of BASIL on ASL data\
> Run time basil options:\
> --spatial\
> ---\
> Initial MVN for BASIL is: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/finalMVN\
> Creating output directory: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/init/finalMVN"\
> STEP 1: VB - Tissue - init with STEP 0\
> ----------------------\
> Welcome to FABBER v4.0.10-dirty\
> ----------------------\
> Last commit: Wed May 19 11:36:18 2021\
> Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step1/logfile\
> NEWMAT exception caught in fabber:\
>  Invalid value given for option: = (Failed to convert to required type)\
> \
> Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step1/logfile\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step1/finalMVN"\
> STEP 2: Spatial VB Tissue - init with STEP 1\
> ----------------------\
> Welcome to FABBER v4.0.10-dirty\
> ----------------------\
> Last commit: Wed May 19 11:36:18 2021\
> Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/logfile\
> NEWMAT exception caught in fabber:\
>  Invalid value given for option: = (Failed to convert to required type)\
> \
> Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/logfile\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/finalMVN"\
> End.\
> Using BASIL step /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/mean_ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/mean_ftiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5831 Abort trap: 6           fslmaths $\{finalstep\}/mean_ftiss -thr 0 $2/ftiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/mean_delttiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/mean_delttiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5832 Abort trap: 6           fslmaths $\{finalstep\}/mean_delttiss -thr 0 $2/delttiss\
> Fabber variance calculator\
> Working in /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2\
> Calculating variance for: ftiss\
> FABBER: MVNtool\
> FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/mask_dil'\
> FabberRunDataNewimage::Dimensions: x=128, y=128, z=36, vols=1\
> FabberRunDataNewimage::Voxel size: x=1.875mm, y=1.875mm, z=3.87471mm, TR=1 sec\
> FabberRunDataNewimage::Intents: 0, 0, 0, 0\
> FabberRunDataNewimage::Setting coordinates from extent\
> Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/finalMVN (File is invalid or does not exist)\
> Calculating variance for: delttiss\
> FABBER: MVNtool\
> FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/mask_dil'\
> FabberRunDataNewimage::Dimensions: x=128, y=128, z=36, vols=1\
> FabberRunDataNewimage::Voxel size: x=1.875mm, y=1.875mm, z=3.87471mm, TR=1 sec\
> FabberRunDataNewimage::Intents: 0, 0, 0, 0\
> FabberRunDataNewimage::Setting coordinates from extent\
> Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/finalMVN (File is invalid or does not exist)\
> Done.\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/var_ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/var_ftiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5843 Abort trap: 6           fslmaths $\{finalstep\}/var_ftiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_ftiss $2/var_ftiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/var_delttiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/var_delttiss\
> /usr/local/fsl/bin/oxford_asl: line 525:  5844 Abort trap: 6           fslmaths $\{finalstep\}/var_delttiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_delttiss $2/var_delttiss\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/basil/step2/finalMVN"\
> Performing final registration\
> Performing registration\
> ASL_REG\
> Input file is: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/ftiss\
> Registration FINAL stage (BBR)\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/ftiss\
> /usr/local/fsl/bin/asl_reg: line 385:  5878 Abort trap: 6           fslmaths $infile -mas $mask $tempdir/asldata_brain\
> '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/mask.nii.gz' and '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/mask.nii.gz' are the same file\
> Running BBR\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Could not open matrix file /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/low2high_final.mat\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/asldata_brain\
> /usr/local/fsl/bin/epi_reg: line 390:  6104 Abort trap: 6           $FSLDIR/bin/applywarp -i $\{vepi\} -r $\{vrefhead\} -o $\{vout\} --premat=$\{vout\}.mat --interp=spline\
> BBR end\
> Saving FINAL output\
> cp: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/low2high_final.mat: No such file or directory\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_u1u4tgf__asl_reg/low2high_final"\
> '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/tissseg.nii.gz' and '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/tissseg.nii.gz' are the same file\
> Tidying up\
> ASL_REG - Done.\
> Generating calibration image in structural space\
> Generating analysis mask from final structural registration\
> Using user-supplied structural->standard space warp to generate cortical GM/WM masks\
> T1t (for calibration): 1.3\
> Calibration is voxelwise\
> \
> WARNING:: Inconsistent orientations for individual images in pipeline!\
>          Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!\
> \
> Image Exception : #3 :: Attempted to multiply images of different sizes\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Attempted to multiply images of different sizes\
> /usr/local/fsl/bin/oxford_asl: line 2424:  7862 Abort trap: 6           fslmaths $Mo -fmedian -mas $tempdir/mask -ero $tempdir/calib_ero\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/calib_ero\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/calib_ero\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/calib_ero\
> \
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/calib_ero\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl/calib_ero\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss"\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> /usr/local/fsl/bin/oxford_asl: line 265:  7906 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Mean perfusion in gm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Mean perfusion in cortical gm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/std_space///perfusion\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/std_space///perfusion\
> /usr/local/fsl/bin/oxford_asl: line 347:  7910 Abort trap: 6           fslmaths $outdir/std_space/$subdir/$parname -div $normval $outdir/std_space/$subdir/$\{parname\}_norm\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> /usr/local/fsl/bin/oxford_asl: line 347:  7911 Abort trap: 6           fslmaths $outdir/native_space/$subdir/$parname -div $normval $outdir/native_space/$subdir/$\{parname\}_norm\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struct_space///perfusion\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struct_space///perfusion\
> /usr/local/fsl/bin/oxford_asl: line 347:  7912 Abort trap: 6           fslmaths $outdir/struct_space/$subdir/$parname -div $normval $outdir/struct_space/$subdir/$\{parname\}_norm\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss"\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///delttiss\
> /usr/local/fsl/bin/oxford_asl: line 265:  7919 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Mean arrival in gm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Mean arrival in cortical gm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Mean perfusion in wm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion\
> Mean perfusion in cerebral wm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Mean arrival in wm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///arrival\
> Mean arrival in cerebral wm is\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss"\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> /usr/local/fsl/bin/oxford_asl: line 265:  7933 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
> (standard_in) 1: parse error\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/std_space///perfusion_var\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/std_space///perfusion_var\
> /usr/local/fsl/bin/oxford_asl: line 371:  7938 Abort trap: 6           fslmaths $outdir/std_space/$subdir/$\{parname\}_var -div $normval $outdir/std_space/$subdir/$\{parname\}_var_norm\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_var\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_var\
> /usr/local/fsl/bin/oxford_asl: line 371:  7939 Abort trap: 6           fslmaths $outdir/native_space/$subdir/$\{parname\}_var -div $normval $outdir/native_space/$subdir/$\{parname\}_var_norm\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struct_space///perfusion_var\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/struct_space///perfusion_var\
> /usr/local/fsl/bin/oxford_asl: line 371:  7940 Abort trap: 6           fslmaths $outdir/struct_space/$subdir/$\{parname\}_var -div $normval $outdir/struct_space/$subdir/$\{parname\}_var_norm\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss"\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_delttiss\
> /usr/local/fsl/bin/oxford_asl: line 265:  7948 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss\
> /usr/local/fsl/bin/oxford_asl: line 307:  7954 Abort trap: 6           fslmaths $tempdir/$subdir/$param -div $Moval -mul $multiplier $tempdir/$subdir/$\{param\}_calib\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib"\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///ftiss_calib\
> /usr/local/fsl/bin/oxford_asl: line 265:  7959 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Mean perfusion_calib in gm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Mean perfusion_calib in cortical gm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Mean perfusion_calib in wm is\
> Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/native_space///perfusion_calib\
> Mean perfusion_calib in cerebral wm is\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss\
> /usr/local/fsl/bin/oxford_asl: line 307:  7969 Abort trap: 6           fslmaths $tempdir/$subdir/$param -div $Moval -mul $multiplier $tempdir/$subdir/$\{param\}_calib\
> Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib"\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_l7q2plai_ox_asl///var_ftiss_calib\
> /usr/local/fsl/bin/oxford_asl: line 265:  7974 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
> Output is /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_002_v01/\
> OXFORD_ASL - done.\
> \
> Return code: 0\
> \
> }
> 
> 
> ########################################################################
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